Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq15196 253 2e-62 seq15718 192 7e-44 seq19651 136 5e-27 >seq15196 Length=3550818 Score = 253 bits (280), Expect = 2e-62 Identities = 609/918 (66%), Gaps = 5/918 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | |||| || || | |||||||| || || ||| ||| | |||||| Sbjct 812087 TTATGCCTCAGATGTTCATCCAAACACTGGATGGCAAAGTGGTCGACGTCCACGTCGAAC 812028 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| ||| || || ||||| || | || || | ||| || Sbjct 812027 TTATTGGCAAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCTCCAGCTCCAAAA 811971 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| ||||| ||| || || || | || || | | Sbjct 811970 ATGCACACCGAGCGCACGTGGACGCCATCGCAGGGTGGGTAGGGAGCACCCTTAGAGATG 811911 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||| |||||||| || ||||| | | ||||||||||| || |||| Sbjct 811910 TCACCCTCATAGTACTGCCACTTGACAAACCTGGCAACTGCCTGCATGTCAGACAAGTCG 811851 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | || | || | | ||||| || |||| | || || | ||| ||||| Sbjct 811850 TACTTATGG-CTCAAGGAGAGAGAGCCAGGGACTTCCGGGATCCTTTGGATAGTGGCCCA 811792 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || |||| || ||||||||| |||| || ||| Sbjct 811791 GAGATACTCATCCGGGCTGTAGGTGTCCTGCGCCCACTCCATAAACTTTTGGATTTTTTC 811732 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || ||||| |||| | || | ||| || || || || ||||| Sbjct 811731 ATTCTCTAGCACATACCCCACGTACTCCCTGCTGACCACAAAATAGGCACTGCCTGAAAA 811672 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | ||||||||| | | |||| | Sbjct 811671 AAGAGGTGTTTCAAGTGGAGGACGCATTTTGACAGTCCCCGTGTTGGTCAGCTTTCCATT 811612 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 || || | | | ||| ||||||| | ||| ||| | | | ||||| || Sbjct 811611 AACAACTGCATACCGCTTTTTCCACCTTTCTTCTTTATTGGAGGGCATCTTCTCGGTTTC 811552 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| |||| || | ||| |||| | || || ||||| ||||| |||| Sbjct 811551 AAGGTTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAAT 811492 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 ||||| || | ||||| ||||| || | || ||||| | || | || ||| || Sbjct 811491 AGGAAAATCCATACCGCAAAGATTTATTAAGTACTTCCAGGGTGCACTCATTCTGTAGAG 811432 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 |||| | ||||| ||||||||||| || |||||||| || || || || || ||||| Sbjct 811431 GTCCTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAAGATGCATAAACCACACTCTC 811372 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 || | | |||| || |||||||| |||||| || | || |||||||| || | | Sbjct 811371 CAGCTGACTGGCCACGAAGACATTACTGAAACAGGACGCAATGCCCATCACTGCAGCTAA 811312 Query 162846 GAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 ||| | || | ||| || || ||||| | ||| || | ||||||||| ||||| Sbjct 811311 GAAGGACTCCTCTGATTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGAT 811252 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 ||||||||| | || || | ||| || || || || || ||||| |||||||| ||||| Sbjct 811251 GGCCCTCAGGAGCCTGTCCAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTAT 811192 Query 162966 GGGGAACTCAGCCTCCTC 162983 || |||| ||||| || Sbjct 811191 TGGAAACTGCGCCTCTTC 811174 >seq15718 Length=2773767 Score = 192 bits (212), Expect = 7e-44 Identities = 219/294 (74%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || | ||||| |||| || | || Sbjct 2253392 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGATATTGAAGAGAC 2253451 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | || || ||| || Sbjct 2253452 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATAGTTGAGTTTTGGA 2253511 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||||| || || ||| || | ||||||||| |||||||| || Sbjct 2253512 GTCCCAGCTCAGTGATGTTCATCCTGTTCTTATAGGCAGGCTGGACTACAACACCATGGA 2253571 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||||| |||||||||||||| ||||| |||||||| | |||||||| || || | Sbjct 2253572 GCTCACTGAAGGTGGCCATGTTTTCTGGGCTTGTAGCCTTCTTTTTCTGCCATGTCACAA 2253631 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 || || || | | ||| | ||||||||||| |||||||||||||||| Sbjct 2253632 CCAAGACATCCTGGAAACTTTTCAAAGAGCATCTTATGGAAGCAGGTGTGTTCA 2253685 Score = 120 bits (132), Expect = 4e-22 Identities = 163/224 (73%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||| ||||||||| || || |||||||||| || | || | ||| | |||||||| Sbjct 2250886 ACACTTTGTCTGAAGTAGGTCACAGTCCCCAGATGCAGCACCTGGCAGACCACCTCCT-- 2250943 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| || || || ||||| ||||||||||| ||||| Sbjct 2250944 -TCCCCACCTGTCTCTTGGGGTCTTTGACCTGGAGGATGCTGGTAACAGATGTGGTCCCA 2251002 Query 171623 TTACGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | | |||| | | | |||||||||||| || || ||||| || ||||| | Sbjct 2251003 TTTGGGT-TAGAGAGAATCTCAGTACTATTTTCAATCCCTGATCCACGGACCTTCCAGGA 2251061 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | | ||| ||||| | ||||| ||||||||||| || |||| Sbjct 2251062 GACCAGAGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 2251105 >seq19651 Length=6732134 Score = 136 bits (150), Expect = 5e-27 Identities = 421/640 (66%), Gaps = 15/640 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| |||| | || || | | | Sbjct 932884 TCCAGTTAAAGTAACTAAGGTATAGCTTATTGTTTTTGTCGACTTCCTTCAGATACTTCG 932825 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 932824 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 932765 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 932764 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 932705 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||| || ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 932704 TGTAAAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 932645 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | |||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 932644 TACAAGTGGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 932587 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 932586 CCCATAAGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 932528 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 932527 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 932473 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | || || | || | | ||||| ||||| || ||||| || Sbjct 932472 TTCAAACACGAAAGGGTTGGTGCTCACTGTCAAGAAGCCATAAGGCACTTGGATATCTGA 932413 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 ||| || | ||| || | || || ||||| | || || ||||| | ||| ||| | Sbjct 932412 GTCACGGCGGTAAGTCAGAGTCAGGTTGAACAAGTGCTCAATACCACTCTTTTGAGGCG- 932354 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | |||||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 932353 TGTGAGTTGGCGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCCTGCT 932294 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 932293 GAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 932254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578269034014400