Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq15718 127 5e-24 seq2891 87.8 4e-12 >seq15718 Length=2773767 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || ||||| || || |||||| | | || ||| || || Sbjct 1505087 CAGATTTTTGTAAAAACCCTTACAGGGAAGACTATCACTCTCAAGGTTGAACCCTCGGAT 1505028 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| ||||| || || || ||||||||| || || ||| Sbjct 1505027 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 1504968 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || || || || ||||| ||||||||||| |||||| | || |||||| | Sbjct 1504967 AGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATT 1504908 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| ||||| ||||||||||| Sbjct 1504907 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 1504870 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 1504870 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 1504929 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || || || || | ||| ||| Sbjct 1504930 TGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA 1504974 >seq2891 Length=6317780 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| || || Sbjct 1420333 GTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTAATTTTT 1420392 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||| | || | |||| | || || |||| Sbjct 1420393 GCTGGCAAGCAACTGGAAGATGGATGTACT----CTGACTGCAACATTCAAAAGGAGTGC 1420448 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 |||||||||||||| ||||||||| Sbjct 1420449 ACTCTTCACCTTGTGTTGAGACTT 1420472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181479512681419