Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq15718 219 5e-52 seq15651 167 3e-36 seq3891 154 2e-32 seq1 123 3e-23 >seq15718 Length=2773767 Score = 219 bits (242), Expect = 5e-52 Identities = 240/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||| ||||| || | | ||||||||| || || ||| | | |||||| || Sbjct 2253713 GTGGTGACCGAGGATCTAAGAGAGAGGCTGAACACACCTGCTTCCATAAGATGCTCTTTG 2253654 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | || ||||| || || |||| || |||||||||| ||| | || | ||||| Sbjct 2253653 AAAAGTTTCCAGGATGTCTTGGTTGTGACATGGCAGAAAAAGAAGGCTACAAGCCCAGAA 2253594 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| || || || | ||| || || || |||||||| || |||||| ||| | Sbjct 2253593 AACATGGCCACCTTCAGTGAGCTCCATGGTGTTGTAGTCCAGCCTGCCTATAAGAACAGG 2253534 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || |||||||| |||| ||||||||||||||||| ||||| || |||||||||||| | Sbjct 2253533 ATGAACATCACTGAGCTGGGACTCCAAAACTCAACTATCACCTTCTGGAATACCACCCTG 2253474 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| |||| || ||||| || | |||||| | |||||| ||||| || Sbjct 2253473 GAGGATGAAGGGTGTTACATGTGTCTCTTCAATATCTTTGGTTATGGGAAGATCTCAGGA 2253414 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 2253413 ACAGCCTGCCTCACCCTCT 2253395 Score = 185 bits (204), Expect = 1e-41 Identities = 207/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 ||||||||||| || || || || || |||| | ||| |||||||| || ||||| || Sbjct 2251151 GTGCAGCCCACAGTATTCCTTCACTACAAATACTCTGAAGACCACCTAAATATCACTTGC 2251092 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| | |||| | | | |||||| | || |||| |||||| Sbjct 2251091 TCTGCCACTGCCCGCCCAGCCCCTCTGGTCTCCTGGAAGGTCCGTGGATCAGGGATTGAA 2251032 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| |||| || | | ||||| || || ||||| ||||| | ||||| Sbjct 2251031 AATAGTACTGAGATTCTCTCTAACCCAAATGGGACCACATCTGTTACCAGCATCCTCCAG 2250972 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || |||||||||||||| ||| |||| |||||||| ||||||| ||| ||| ||||| Sbjct 2250971 GTCAAAGACCCCAAGAGACAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCATCTGGGG 2250912 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || |||| || ||| ||| ||||| |||| Sbjct 2250911 ACTGTGACCTACTTCAGACAAAGTGTGAGCAAAGGTA 2250875 >seq15651 Length=9404055 Score = 167 bits (184), Expect = 3e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || ||||| | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 6566929 CTTTAGACCGGTGAGGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 6566988 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| ||||||| ||||||||||||||| || ||||| |||| Sbjct 6566989 CGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTT 6567048 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||| ||||| ||||||||||| Sbjct 6567049 CACCACATAGAACTGGCAGAGGGCGTGACACGGAGGCAGCGCCAT 6567093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || |||| Sbjct 6570648 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTG 6570707 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | ||||| || |||| || | |||||||||||| |||||| Sbjct 6570708 GAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCGTCCCAGATTTTGACTCCC 6570767 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || || || |||| || ||||| ||| ||| || Sbjct 6570768 TTGGAAGACAGTTCTTTAGCGTTTGTGGATCCCTGGAAGA 6570807 >seq3891 Length=6109150 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 229891 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 229832 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| || ||||| || |||| Sbjct 229831 TGCCGCAGGCTGAGAACCAC------------GGCCCAGACATCAAAGAGCACGTGAACT 229784 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| ||||| || || ||||||||||||| ||| Sbjct 229783 CCCTGGGAGAGAAGCTGAAGACGCTGAGGCTGAGGCTGCGGCGCTGT 229737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 227505 AGCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 227446 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||| || |||| Sbjct 227445 TAGAAGCCTACATGACAATGAAGATGA 227419 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||||||| |||| ||||||||||||||| ||||||| Sbjct 231162 AGTCTGAGAACAGCTGCACCCACTTTCCAGCCAGCCTGCCTCACATGCTCCGAGAGCTCC 231103 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | || || || |||| || |||||||| ||| Sbjct 231102 GAGCTGCCTTCGGCAGGGTGAAGACTTTCTTT 231071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||| |||||| ||||||||||||||||||||||| | |||| ||||||| ||||||||| Sbjct 230229 CAAACGAAGGATCAGCTGGACAACATGTTGTTAAACGAGTCCTTGCTGGAGGACTTTAAG 230170 Query 178233 G 178233 | Sbjct 230169 G 230169 >seq1 Length=29265399 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| | | ||||| ||||||| |||| |||||||| Sbjct 7023504 GTACTCCCTGGTATTTATCATTGGCGTGGTGGGCAACATCCTGGTGGTCCTGGTCCTCAT 7023563 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| | |||||||| ||||| ||| ||||||||||||| ||| Sbjct 7023564 GCAGTACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCCTCTCTGA 7023623 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 7023624 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 7023661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGG-CAATGCCCTGGTGATCCTAGTCCTCA 8668 |||||| |||||||| | | ||||| |||| ||||| | ||||| | |||||| Sbjct 6977802 GTACTCCCTGGTGTTCATCGT-GGGCTTCTTGGGCAATGTCACAGTGATAGTGATCCTCA 6977744 Query 8669 TAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTG 8728 ||| |||| |||||||||||| ||| |||||||| |||| ||||| |||| | || Sbjct 6977743 CAAAATACAGGAGGCTCAGGATTCTGAGCAACATCTACCTGCTCAACTTGGCAATCTCTG 6977684 Query 8729 ACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 || |||| | | ||||| || || || ||||||||| Sbjct 6977683 ACTTGCTATTCCTCTTCACTCTGCCATTCGGGATTCACT 6977645 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| ||||||| | || ||||| | ||||| ||||| |||| |||| ||| Sbjct 6900777 TACTCATTGGTGTTCATCTTCGGGCTTGTGGGCAACATGCTGGTCGTCCTCATCCTGATA 6900718 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||||| || |||||| |||||| |||| ||||||||||| | |||| Sbjct 6900717 AACTGCAAAAAGCTCAAGAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 6900658 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||| || | | ||||| |||| || ||| Sbjct 6900657 CTGTTGTTCCTGCTCACCATCCCATTCTGG 6900628 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 7024220 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCAG 7024279 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || ||||| ||||| | ||||| Sbjct 7024280 TGATCTATGCCTTTGTCGGCGAGAGGTTCC 7024309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583323609549600