Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq20429 132 4e-26 seq1 107 2e-18 seq15374 105 6e-18 seq15718 98.7 9e-16 seq1558 96.9 3e-15 >seq20429 Length=9870158 Score = 132 bits (146), Expect = 4e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 2401349 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAA 2401290 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||| | || ||||||||| ||||||| ||| | | | Sbjct 2401289 GATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATT 2401230 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||| | ||||| || || ||||||| || ||||| Sbjct 2401229 CTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 2401170 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 2401169 AAAGATCTGCATT 2401157 >seq1 Length=29265399 Score = 107 bits (118), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || ||| | || |||| |||||| || ||||| Sbjct 23783121 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAA 23783062 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||||||| | ||| | || ||||| ||| |||||| |||| | | Sbjct 23783061 GATGAGCCGCTGCTGGTCAGGGGGATCCCT-TCCTTATCCTGGATCTTGGCTTTCACATT 23783003 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 23783002 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 23782943 Query 35725 AAATATCTGCATTCTG 35740 ||| || |||||| || Sbjct 23782942 AAAGATTTGCATTTTG 23782927 >seq15374 Length=4994092 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || ||| | || ||||||||||| || ||||| Sbjct 172875 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAA 172816 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||||||| | || | | ||||| ||| |||||| |||| | | Sbjct 172815 GATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATT 172756 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 172755 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 172696 Query 35725 AAATATCTGCATTCTG 35740 ||| || |||||| || Sbjct 172695 AAAAATTTGCATTTTG 172680 >seq15718 Length=2773767 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 1504864 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1504923 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 1504924 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1504983 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| ||| Sbjct 1504984 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 1505043 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | ||||| || || || || | ||||| ||||| |||||||| Sbjct 1505044 TTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 1505090 >seq1558 Length=6673444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || ||| | || ||||||||||| | ||||| Sbjct 2790668 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAA 2790609 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||| || | || | || ||||| ||| |||||| ||||| | | Sbjct 2790608 GATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 2790549 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | |||| ||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 2790548 CTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2790489 Query 35725 AAATATCTGCATTCTG 35740 ||| || |||||| || Sbjct 2790488 AAAGATTTGCATTTTG 2790473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450666594538120