Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq20429 114 1e-20 seq15718 111 2e-19 seq16418 102 8e-17 seq15374 100 3e-16 seq1 89.7 5e-13 seq1558 87.8 2e-12 seq16296 84.2 2e-11 >seq20429 Length=9870158 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 2401384 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2401325 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||||||||| || Sbjct 2401324 AGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGG 2401265 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || ||| ||||| || | |||||| | || || Sbjct 2401264 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 2401205 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || | || || || || || |||||| Sbjct 2401204 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq15718 Length=2773767 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || || Sbjct 1504873 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTATG 1504931 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| |||||||||| | |||||||| || || || ||||| Sbjct 1504932 TCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 1504991 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||| || || | ||| || | |||||| Sbjct 1504992 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGT 1505051 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| || ||||| ||||| ||| Sbjct 1505052 GATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTTG 1505094 >seq16418 Length=1794168 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134509 GGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCT 134568 |||| | ||||| || || |||||||||||||| || ||||| || || ||| Sbjct 1338115 GGTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCC 1338056 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||||||||| |||| |||| |||| ||||| || ||||| || || ||||| |||| Sbjct 1338055 GTTTGCCTGCAAATATCAGACGCGGCTGGTCGGG-GGGATGCCCTCCTTGTCTTGGATTT 1337997 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | |||||| || | ||||| | ||| || || || || ||||| || || | Sbjct 1337996 TGGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTCTTGCCCG 1337937 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | || || || ||||| ||||| Sbjct 1337936 TCAGGGTCTTCAC-AAAATCTGCAT 1337913 >seq15374 Length=4994092 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || || || || || ||||||||||| || ||| | Sbjct 172901 AGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGC 172842 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||||||||| || | |||||||| || || || || ||||| Sbjct 172841 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCC 172782 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||| || || | |||||| | ||||| || || || Sbjct 172781 TTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTG 172722 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTTCAA 134728 ||||| || || || | || || || ||||||||||||||| | | ||| || Sbjct 172721 ATGGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTTGATCTAGTTTAA 172669 >seq1 Length=29265399 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || || || || || || ||||||||||| | Sbjct 23783156 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 23783097 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||| ||||||||||| || | |||||||| || || || Sbjct 23783096 AGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGG-GGG 23783038 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||| || || | |||||| | ||||| Sbjct 23783037 ATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 23782978 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || || || |||||||||||| Sbjct 23782977 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 23782927 >seq1558 Length=6673444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || || || || ||||||||||| || ||| | || || Sbjct 2790685 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 2790626 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| |||| |||||| || | ||||||||||| || || |||||||| || || || Sbjct 2790625 AGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGG 2790566 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || | | |||| | | ||||| || || || ||||| || Sbjct 2790565 ATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 2790506 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | || || || || |||||||||||| Sbjct 2790505 CCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 2790473 >seq16296 Length=2251693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | ||| ||||| || ||||| || || ||||||||||| || | Sbjct 936308 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAATCCGAA 936367 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| |||| |||| ||||||||| || || || Sbjct 936368 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACGCTGCTGGTCAGGTGGG 936427 Query 134607 ATGCCT 134612 |||||| Sbjct 936428 ATGCCT 936433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505256010318280