Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2225 168 9e-37 seq19918 132 7e-26 seq11110 125 1e-23 seq15174 113 6e-20 seq14041 109 8e-19 seq21428 96.9 5e-15 seq14574 96.9 5e-15 >seq2225 Length=8022615 Score = 168 bits (186), Expect = 9e-37 Identities = 309/447 (69%), Gaps = 13/447 (3%) Strand=Plus/Plus Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 |||||| |||| | |||||| |||||||| |||| ||||||||||| ||||| | ||| Sbjct 9515 ATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTC 9574 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 | |||||||||| ||||| || || | || |||||||| || || | ||||| Sbjct 9575 ATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCAAA 9634 Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA---TGCAACAAGTCTCT-CTCCGT 39776 || | ||||||||||||||||| ||||| ||||| ||||||| || | | | Sbjct 9635 TGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTTGGTAGGCAGC 9694 Query 39777 AACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCA 39836 ||| | || | |||| | |||||||| || |||||||| || ||||||| Sbjct 9695 CTCTT-TGTCCCCA---GTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGCA 9750 Query 39837 TTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTA 39896 |||| || || | |||||| | | |||| | ||||||| |||| || | Sbjct 9751 GCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCTTTGAAATCTTTA----ATGTGTCCA 9806 Query 39897 TTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAAC 39956 | | || ||||||||| || ||| | ||||||| | || || || || || || |||| Sbjct 9807 TAAGCA-ACTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAGAAAC 9865 Query 39957 ATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTA 40016 | ||||| ||||| || || ||| | || | ||| || | || ||||| ||| Sbjct 9866 AGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTTACTC 9925 Query 40017 TTCCATCACTAGCGGCAAAAAATGCCA 40043 | || ||||| || ||||| || |||| Sbjct 9926 TGCCGTCACTTGCTGCAAAGAAAGCCA 9952 >seq19918 Length=441265 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 39759 CAACAA 39764 | |||| Sbjct 48804 CTACAA 48809 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || || || || || ||||| | ||||| ||||| || || ||| | ||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Query 39997 CGCC 40000 | || Sbjct 50588 CACC 50591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || || || || || ||||| | ||||| ||||| || || ||| | ||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 Query 39997 CGCC 40000 | || Sbjct 64037 CACC 64040 >seq11110 Length=21012544 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| ||||| |||||||| ||||| | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1790555 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 1790554 ACCACTCTTTCCCC 1790541 Score = 86.0 bits (94), Expect = 9e-12 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || ||||||||||| || ||||||||||| || |||||||| || || | Sbjct 1785554 AAAATCTTACC---AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1785498 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || ||||||||||| ||||| | | | | || ||||||| | || ||| |||| Sbjct 1785497 TGTGAGAGATAAAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1785438 Query 40107 ATA 40109 ||| Sbjct 1785437 ATA 1785435 >seq15174 Length=1580434 Score = 113 bits (124), Expect = 6e-20 Identities = 242/356 (68%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | ||||| || || |||| | | ||| ||||| | Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTC 203901 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || |||||| | || |||| | | || ||||| || || | ||| || | |||| Sbjct 203900 TATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTTAC 203841 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || |||| ||| || ||||||||||| Sbjct 203840 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 203781 Query 37527 ATCGATTACTCCGCCTCCTACATC---AATACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || || |||||||||| || | ||| || ||| || || | ||||| Sbjct 203780 ATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGGAGC 203721 Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643 || |||||| ||||| || | || ||| |||| ||||| || | ||| || | Sbjct 203720 TACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAACAGT-T 203663 Query 37644 TTCTCCA-GGAAGG-ATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 ||||||| || || || || ||||| || || || || | || || ||||| || Sbjct 203662 TTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 203607 >seq14041 Length=6761596 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || ||||| ||||| | | Sbjct 1446600 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 1446659 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || || |||| ||||| || ||||||| Sbjct 1446660 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCCGTTTCAGCAGCCAAAGTATCTA 1446719 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||||| || || || || |||||| ||||| || |||||||||| Sbjct 1446720 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCATGG 1446767 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || ||||| ||||| || ||||| || ||||| | || Sbjct 1419827 TGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 1419886 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 1419887 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1419946 Query 68839 TTTCTAAGACCAT 68851 || || | ||||| Sbjct 1419947 TTGCTTATACCAT 1419959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || ||||| |||| | | | Sbjct 1430286 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 1430345 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | || || |||||||| ||| Sbjct 1430346 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGT 1430405 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 1430406 TCCAGGTAGATAGC 1430419 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || ||||| ||||| | |||||||| || || Sbjct 1441092 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 1441151 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || || || | |||||| |||| | || | ||||||| Sbjct 1441152 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 1441211 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 1441212 ATATGCTGTGGTCTTTC 1441228 >seq21428 Length=20122155 Score = 96.9 bits (106), Expect = 5e-15 Identities = 243/365 (67%), Gaps = 7/365 (2%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| ||| | || || || || |||| | | ||| Sbjct 2236108 TTAATTCTTTCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCCAAAACTTG 2236049 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || | || | | || ||||| || || | ||| || Sbjct 2236048 AACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATCACC 2235989 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | |||| || ||| || ||| ||| ||| | ||| | || |||| ||| || || Sbjct 2235988 TTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCT 2235929 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATC---AATACCTTTTAGAGACAAACCCGA 37574 |||||||||||| || || || |||||||||| || | ||| || ||| || || Sbjct 2235928 ATAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGA 2235869 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 | ||||||| |||||| ||||| || | || ||| |||| ||| | || | Sbjct 2235868 ACATGGAGCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTATCTTCA- 2235810 Query 37635 CAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| || ||||||| ||| | || || ||||| || || || || | | || ||| Sbjct 2235809 CAACAGT-TTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTACAGGTTGTAGCCC 2235751 Query 37693 GCGGC 37697 || || Sbjct 2235750 GCAGC 2235746 >seq14574 Length=3519100 Score = 96.9 bits (106), Expect = 5e-15 Identities = 241/360 (67%), Gaps = 7/360 (2%) Strand=Plus/Plus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| ||| | || || | || |||| | | ||| Sbjct 1299194 TTAATTCTTTCCAGTGGAACCAAAACCTCCTGAACCCCTTCCAGTGTCATCCAAAACTTG 1299253 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || | || | | || ||||| || || | ||| || Sbjct 1299254 AACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATCACC 1299313 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | |||| || ||| || ||| ||| ||| | ||| | || |||| ||| || || Sbjct 1299314 TTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCT 1299373 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATC---AATACCTTTTAGAGACAAACCCGA 37574 |||||||||||| || || || |||||||||| || | ||| || ||| || || Sbjct 1299374 ATAATCTTCATCTATGACACCAGCTCCTACATCTGTAAAATGTTTGGCAGCCAAGCCAGA 1299433 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 ||||||| |||||||||||| || | || ||| |||| ||||| || | Sbjct 1299434 ATGTGGAGCTACTCTTCCATAACATCCAGAAGGAAGAGCTATCTGAATGTCTGTCTTCA- 1299492 Query 37635 CAATTGTCTTTCTCCA-GGAAGG-ATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| || |||||||| || || || || ||||| || || || || | || || ||| Sbjct 1299493 CAACAGT-TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCC 1299551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686715272031960