Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16108 145 6e-30 seq19918 113 4e-20 seq2225 93.3 3e-14 seq15651 87.8 1e-12 >seq16108 Length=2361410 Score = 145 bits (160), Expect = 6e-30 Identities = 204/285 (72%), Gaps = 1/285 (0%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 85515 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 85456 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || ||||| |||||||| |||| || |||||||| ||| | | | Sbjct 85455 ATTTCTTGGATTGGATAATGCGGGAAAAACAACATTGCTACACATGCTAAAAGATGACAG 85396 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | |||| ||| ||||||||||| || || ||| |||| || ||||||||||| Sbjct 85395 ACTTGGACAGCACGTCCCAACATTACATCCCACTTCAGAAGAACTGACCATTGCTGGCAT 85336 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || ||||| ||||||| || ||| ||||| |||| || Sbjct 85335 GACTTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTA 85276 Query 47440 TTTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGTGCAGA 47484 ||| || | ||| || || | | | || || |||||||| Sbjct 85275 CCTTCCTGCTATCAATGGCATTGTATTTTTGGTGGATTGTGCAGA 85231 >seq19918 Length=441265 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 50575 CAAGAAGTTCAGATTAC-AGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 50517 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 50516 CATACATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 50468 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 64024 CAAGAAGTTCAGATTAC-AGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 63966 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 63965 CATACATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 63917 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 48819 GGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 48760 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| | Sbjct 48759 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTT 48700 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 48699 ATTAGCAGAGATGA 48686 >seq2225 Length=8022615 Score = 93.3 bits (102), Expect = 3e-14 Identities = 289/438 (66%), Gaps = 11/438 (3%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| |||| || ||||| || || ||||| | ||| ||||| || | ||| || || Sbjct 9956 GTTCTGGCTTTCTTTGCAGCAAGTGACGGCAGAGTAAATGACAACTGGGTGGAGCGTTTC 9897 Query 43910 GCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 ||||||||||| |||| ||||||| | ||||| ||||| || |||||||||| | Sbjct 9896 AGCCAAGAAGTTCAGATTA-CAGAAGCCCACTGTTTCTATGGCTTCCAAATTGCCACGTA 9838 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| || | ||| || ||||| ||| | || || || |||| |||||| | || Sbjct 9837 AAACATACCTTCTGAGATGTATAGT-TGCTTATGGA----CACATTAAAGATTTCAAAGA 9783 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACT 44087 | | | | || | || || |||| | || |||| | || | || ||||| | Sbjct 9782 AAGGGAATTTCTCTTCAGCGCCATTGAAATGCTGCCTTGCG-TGAAGAAGAAGGCAGATT 9724 Query 44088 GGGCCCTTAAATGGA-TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 ||||| | |||| | |||| || || ||| ||| || ||||| Sbjct 9723 GGGCCTTGCGTTGGACTGGGGACAAA-GAGGCTGCCTACCAACATGTTGCAGCCTTTGCC 9665 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | ||||||||||| |||||||| | || ||||| | || || ||| | |||||| | Sbjct 9664 GCAGTGGAAGGCATCTTCTTTTCCTGTTCATTTGCATCAATGTTCTGGCTCAAGAAATGG 9605 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || ||||||| | || |||| |||| | || || | ||||| || ||||| Sbjct 9604 GGACTGATGCCCCACCTCACATTTTACTATGAACTTATTAGCAGAGATGAGGGTTTACAC 9545 Query 44267 TGCGATTTTGCTTGCTTG 44284 || || ||||| ||| || Sbjct 9544 TGTGACTTTGCCTGCCTG 9527 >seq15651 Length=9404055 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || ||||| | || ||||| || || || ||||| |||| Sbjct 6567095 TGATGGCGCTGCCTCCGTGTCACGCCCTCTGCCAGTTCTATGTGGTGAACGGTGAGCTGT 6567036 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || | || || |||||||| || || || ||||| ||||| || | Sbjct 6567035 CCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCGTTCAACATCGCCA 6566976 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 | || || ||||||||||| ||||| || ||| | ||| | |||| Sbjct 6566975 GCTACGCCCTGCTCACGTACATGATCGCGCACCTCACCGGTCTAAA 6566930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397346821196695