Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq15174 114 2e-20 seq21428 107 2e-18 seq14574 100 3e-16 >seq15174 Length=1580434 Score = 114 bits (126), Expect = 2e-20 Identities = 207/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | ||||| || || | | ||| || Sbjct 203908 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCT 203849 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || ||||| | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 203848 TTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 203789 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| |||||||| || ||||| || || Sbjct 203788 TAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAA 203729 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || |||||| || |||| | || | | |||| ||| || ||| | || Sbjct 203728 CGTGGAGCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCAC- 203670 Query 22875 AATTGTTTAC-CCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 || |||| | |||||| | |||| ||||| ||| || || || || || || || || Sbjct 203669 AACAGTTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGC 203610 >seq21428 Length=20122155 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | || || || || | | ||| || Sbjct 2236047 ACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATCACCT 2235988 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || ||||| | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 2235987 TTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 2235928 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| |||||||| || ||||| || || Sbjct 2235927 TAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAA 2235868 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || |||||| || |||| | || | | |||| ||| || || | || Sbjct 2235867 CATGGAGCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTATCTTCAC- 2235809 Query 22875 AATTGTTTAC-CCATAGGTTCTATTACGTAATTATACGCGCTATATAG 22921 || |||| | |||||||| |||| ||||| ||| || || || || Sbjct 2235808 AACAGTTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTACAG 2235761 >seq14574 Length=3519100 Score = 100 bits (110), Expect = 3e-16 Identities = 202/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | || || || || | | ||| || Sbjct 1299255 ACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATCACCT 1299314 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || ||||| | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 1299315 TTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 1299374 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| ||||||| || ||||| || || Sbjct 1299375 TAATCTTCATCTATGACACCAGCTCCTACATCTGTAAAATGTTTGGCAGCCAAGCCAGAA 1299434 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 |||| || ||||||||| |||| || | | |||| ||| || ||| | || Sbjct 1299435 TGTGGAGCTACTCTTCCATAACATCCAGAAGGAAGAGCTATCTGAATGTCTGTCTTCAC- 1299493 Query 22875 AATTGTTTAC-CCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCC 22930 || |||| | |||||| | |||| ||||| ||| || || || || || || || Sbjct 1299494 AACAGTTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCC 1299550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603010861349360