Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq15651 149 5e-31 seq18541 113 4e-20 seq15318 113 4e-20 seq22428 107 2e-18 seq21428 91.5 1e-13 >seq15651 Length=9404055 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| ||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 6566932 TAGACCGGTGAGGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 6566991 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| Sbjct 6566992 CACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 6567051 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||| || ||||| || | |||||| |||||||| || ||||| || Sbjct 6567052 CACATAGAACTGGCAGAGGGCGTGACACGGAGGCAGCGCCATCAG 6567096 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 6570632 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 6570691 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| |||| |||||||| ||| || |||||||| Sbjct 6570692 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCGTC 6570751 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| || ||||| | ||||||||| || Sbjct 6570752 CCAGATTTTGACTCCCTTGGAAGACAGTTCTTTAGCGTTTGTGGATCC 6570799 >seq18541 Length=1048218 Score = 113 bits (124), Expect = 4e-20 Identities = 183/260 (70%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || | || || ||||| || || ||||| | Sbjct 494075 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTACTAAGAACTACATTAATTCTGTCCTT 494134 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| ||||||||| || ||||||||||| ||||| |||||||| ||||||| || Sbjct 494135 TAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 494194 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | ||||| | | || | || || || || | Sbjct 494195 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTTGGAAATACTTGAATTCATTCC 494254 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 ||| || ||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 494255 TGAGT------GGGGCCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GAC 494307 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 494308 ACAGCGACGATGCAGTTTAG 494327 >seq15318 Length=11437517 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 110413 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 110472 || || ||||| || || ||||| | | ||||| ||||||||| || ||||||||||| Sbjct 10882438 CTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAG 10882379 Query 110473 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAG 110532 ||||| |||||||| ||||||| ||||| || ||| |||||||| || | ||||| Sbjct 10882378 GTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 10882319 Query 110533 GCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTG 110592 | | || | || || || || | ||| || |||| ||||| || ||||| Sbjct 10882318 TTTTGGAAATACTTGAATTCATTCCTGAGT------GGGGGCCAGGGCAGGTCCCCGTTC 10882265 Query 110593 TTCCCGATGCCCATG-TCT-GGACAC 110616 || || ||||||||| ||| |||||| Sbjct 10882264 TTGCCAATGCCCATGTTCTGGGACAC 10882239 >seq22428 Length=10093839 Score = 107 bits (118), Expect = 2e-18 Identities = 169/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| | || || || || || || || || ||||| || || ||||| | Sbjct 7166811 ATGAGCTCCTTGTGTAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 7166870 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| ||||||||| || ||||||||||| ||||| |||| ||| ||| ||| || Sbjct 7166871 TAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACTCATAATCGCCAGATT 7166930 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| |||||||| || | ||||| | | || | || || || || | Sbjct 7166931 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 7166990 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 ||| || |||| ||||| || || || || || ||||||||| ||| |||||| Sbjct 7166991 GAGT------GGGGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTCTGGGACAC 7167044 >seq21428 Length=20122155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || ||||| || || ||||| | | ||||| ||||||||| || Sbjct 2439326 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGA 2439267 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2439266 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 2439219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406198788945588