Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq15718 100 2e-16 seq1558 100 2e-16 seq20873 87.8 2e-12 seq16296 84.2 2e-11 >seq1 Length=29265399 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||||| | || || || || ||||| || | Sbjct 23782931 ATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 23782990 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || || || || || ||||| || || || || || Sbjct 23782991 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGAT-CCCCCTGACCAG 23783049 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 23783050 CAGCGGCTCATCTTTGCAGGCAAGCAGGTGGAAGATGGGCGCACTCTTTCTGACTACAAC 23783109 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | ||| |||| |||| || ||||||| || Sbjct 23783110 ATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGCCTGAGGGGTGGTAT 23783159 >seq15718 Length=2773767 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||||||||| || || || ||| |||| ||||| | || ||||| || Sbjct 1505091 CATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTATCACTCTCAAGGTTGAACCCTC 1505032 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || || || || || || ||||| || || || ||||| Sbjct 1505031 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 1504972 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | || ||||| ||| ||||||| | || | || || ||||| Sbjct 1504971 GCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAA 1504912 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 1504911 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1504864 >seq1558 Length=6673444 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||||| | || || || || ||||| || | Sbjct 2790477 ATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 2790536 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || ||| || || || || || || || |||||||| || || ||||| Sbjct 2790537 AACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGATCAG 2790596 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || |||| || ||||||| | || |||| || |||||| Sbjct 2790597 CAGCGGCTCATCTTTGCATGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTGACTACAAC 2790656 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| | || ||| |||||||| Sbjct 2790657 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGCTTGAGGGGTGGC 2790704 >seq20873 Length=9479699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||||| | || || || || ||||| || Sbjct 8324526 ATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 8324467 Query 27048 GACTCGATTGAGATGGTCAA--ACAAAAAATTCAAGACAAAGAAGGCATACCACCC-GAT 27104 || | ||||||| || || || ||||| || ||||||||||| || ||| || Sbjct 8324466 GATACCATTGAGAATGTGAAGGGGCCAAGATTCAGGATAAAGAAGGCATCCCCCCCTGAC 8324407 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | | || | || ||||| || ||||||| | || |||| || ||| Sbjct 8324406 CAGCAGTGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTGACTAC 8324347 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTG 27213 | ||| || || |||| |||| | || |||| | || ||| |||||| Sbjct 8324346 AGCATCCACAAAGAGTAGACCCTGCACCTGGTCCTCCGCTTGAGGGGTG 8324298 >seq16296 Length=2251693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| ||||| || || |||||| | |||| | |||||||| |||| || | Sbjct 936433 AGGCATCCCACCTGACCAGCAGCGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCG 936374 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| |||| |||||||||||||| || ||||| ||| | || |||| | ||| |||| Sbjct 936373 CACCCTTTCGGATTACAACATTCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGTCTGCG 936314 Query 27209 GGGTGGCAT 27217 |||||||| Sbjct 936313 AGGTGGCAT 936305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434795867177280