Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9334 241 1e-58 seq18541 235 5e-57 seq15718 190 2e-43 seq22428 161 8e-35 seq13974 122 7e-23 seq15318 114 1e-20 >seq9334 Length=5112722 Score = 241 bits (266), Expect = 1e-58 Identities = 385/550 (70%), Gaps = 7/550 (1%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| || | ||||| || |||| |||||| ||| || || || | ||| Sbjct 1726411 ACGCTAAACTGCATCGTCGCTGTGTCCCAAAACGTGGGCACTGGCAAGAACGGGGACCTG 1726352 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCC 2253 || ||||| || || | |||||||| || |||| ||||||||||| | | ||||| Sbjct 1726351 CCCTGGCCCCCACTCAGGAATGAATTCAAGTATTTCCAAAAAATGACCACAACCTCTTCA 1726292 Query 2254 ACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 | || ||||||||| | || |||| || || ||||| ||| | || |||| | Sbjct 1726291 GCAGAAGGTAAACAGAATCTGGTGATTAGGGATAGGAAGACCTGGCTCTCCATTCC--TG 1726234 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 ||||| | | ||||| || | ||||| ||| | ||||| |||||| | || || || | Sbjct 1726233 AAAAGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTTAGTAGAGAACTCAAGGAAC 1726174 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431 | |||| || ||||| |||||||| |||||| | ||| | || | || |||| Sbjct 1726173 CTCCACAAGGAGCTCATTTTGTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATCGAGC 1726114 Query 2432 GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491 |||||||||| | | | || || | | |||||||| | || || || ||||| ||| Sbjct 1726113 AACCAGAATTAGCACATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATA 1726054 Query 2492 AGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 |||| ||| | | | || | | | |||||| | |||||||| |||| | | Sbjct 1726053 AGGAAGCCATGAATCAACCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACT 1725994 Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 ||||| |||| |||| || ||||||||| || | | |||||||||| || | |||| Sbjct 1725993 TTGAAAGTGACACATTTTTTCCAGAAATTGATTTGAAGAAATACAAACTTCTCTCAGAAT 1725934 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 |||||||||| |||| || || || || || || |||| ||||||||||| ||| Sbjct 1725933 ACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTAT 1725874 Query 2672 ATGaaaaaaa 2681 ||||||| || Sbjct 1725873 ATGAAAAGAA 1725864 >seq18541 Length=1048218 Score = 235 bits (260), Expect = 5e-57 Identities = 385/551 (70%), Gaps = 8/551 (1%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| || | ||||| || | || ||||||||||| || || || | ||| Sbjct 494330 ACGCTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTG 494271 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAA-TGAC---ATCTTCTTC 2252 || ||| | || || | |||||||| || |||| ||||||| |||| | | ||||| Sbjct 494270 CCCTGGGCCCCACTCAGGAATGAATTCAAGTATTTCCAAAAAAATGACCACAACCTCTTC 494211 Query 2253 CACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312 || ||||||||| | || |||||||| || ||||| ||||| || |||| | Sbjct 494210 AGTAGAAGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--T 494153 Query 2313 TAAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 ||||| | | ||||| || ||||||| ||| | ||||| |||| | | || || || Sbjct 494152 GAAAAGAATCGACCTTTAAAGGACAGAATTAATGTAGTTCTTAGTAAAGAACTCAAGGAA 494093 Query 2371 CCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATA 2430 || |||| || ||||| |||||||| |||||| | ||| | || | || ||| Sbjct 494092 CCTCCACAAGGAGCTCATTTTGTTGCTAAAAGTCTGGATGATGCCTTAAAACTTACCGAG 494033 Query 2431 GGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTAT 2490 |||||||||| | | | || || | | |||||||| | || || || ||||| ||| Sbjct 494032 CAACCAGAATTAGCAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTAT 493973 Query 2491 GAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAA 2550 |||| ||| | | | || | | | |||||| | |||||||| |||| | Sbjct 493972 AAGGAAGCCATGAATCAACCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGAC 493913 Query 2551 TTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610 |||||| |||| |||| || ||||||||| || | | ||||||| || || | ||| Sbjct 493912 TTTGAAAGTGACACATTTTTTCCAGAAATTGATTTGAAGAAATACAGACTTCTCTCAGAA 493853 Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATA 2670 | |||||||||| |||| || || || || || || |||| ||||||||||| || Sbjct 493852 TACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTA 493793 Query 2671 TATGaaaaaaa 2681 |||||||| || Sbjct 493792 TATGAAAAGAA 493782 >seq15718 Length=2773767 Score = 190 bits (210), Expect = 2e-43 Identities = 183/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1291 TTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATG 1350 |||| |||||||| ||| || || |||||||||||||||||||||| || ||| | Sbjct 2253631 TTGTGACATGGCAGAAAAAGAAGGCTACAAGCCCAGAAAACATGGCCACCTTCAGTGAGC 2253572 Query 1351 ACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGAC 1410 ||| || ||||| || ||||| || || || | | |||||||| |||||||| |||| Sbjct 2253571 TCCATGGTGTTGTAGTCCAGCCTGCCTATAAGAACAGGATGAACATCACTGAGCTGGGAC 2253512 Query 1411 TACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGT 1470 | |||||| ||||||| ||||||||||| || || |||| ||||||||||| |||| || Sbjct 2253511 TCCAAAACTCAACTATCACCTTCTGGAATACCACCCTGGAGGATGAAGGGTGTTACATGT 2253452 Query 1471 GTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || | || || | ||||| | ||||||||| ||||||| || || || ||||| Sbjct 2253451 GTCTCTTCAATATCTTTGGTTATGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 2253397 >seq22428 Length=10093839 Score = 161 bits (178), Expect = 8e-35 Identities = 260/366 (71%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| |||| ||||| || | || ||||||||||| || || || | ||| Sbjct 7167065 ACGCTAAACTGCATTGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAATGGGGACCTG 7167006 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCC 2253 || ||||| || || | |||||||| || |||| ||||||||| ||| | ||||| Sbjct 7167005 CCCTGGCCCCCACTCAGGAATGAATTCAAGTATTTCCAAAAAATGACCACAACCTCTTCA 7166946 Query 2254 ACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 || ||||||||| | | |||||| | || ||||| ||||| || |||| | Sbjct 7166945 GTAGAAGGTAAACAGAATCTGGCGATTATGAGTAGGAAGACCTGGTTCTCCATTCC--TG 7166888 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 ||||| | | ||||| || ||||||| ||| | ||||| |||||| | || || || | Sbjct 7166887 AAAAGAATCGACCTTTAAAGGACAGAATTAATGTAGTTCTTAGTAGAGAACTCAAGGAAC 7166828 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT-A 2430 | ||| || ||||| |||||||| |||||| | ||| | || || ||| | || | | Sbjct 7166827 CTACACAAGGAGCTCATTTTGTTGCTAAAAGTCTGGATGATGC-CTTAAAACT-TACTGA 7166770 Query 2431 G-GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTA 2489 | |||||||||| | | | || || | | || ||||| | || || || ||||| || Sbjct 7166769 GCAACCAGAATTAGCAAATAAAGTAGACATGGTTCGGATAGTAGGAGGCAGTTCTGTTTA 7166710 Query 2490 TGAGGA 2495 | |||| Sbjct 7166709 TAAGGA 7166704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 |||||| | |||||||| || | | |||||| |||| |||| || |||||||| || Sbjct 7166339 CTGTTTGTGACAAGGATCATGTAGGACTTTGAAAGTGACACATTTTTTCCAGAAATGGAT 7166280 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 | | |||||||||| || |||| |||||||||| |||| || || || || Sbjct 7166279 TTGAAGAAATACAAACTTCTCTTAGAATACCCAGGTGTTCTTTCTGATGTCCAGGAGGAG 7166220 Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || |||| ||||||||||| |||||||||| || Sbjct 7166219 AAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAA 7166182 >seq13974 Length=3359612 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 1048051 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 1047992 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 1047991 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 1047932 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 1047931 ATCGCCCTGTGGATGACTGA 1047912 >seq15318 Length=11437517 Score = 114 bits (126), Expect = 1e-20 Identities = 162/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| || ||||| || | || ||||||||||| || || || | ||| Sbjct 10882218 ACGCTAAACTGCATCATCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTG 10882277 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCC 2253 || ||||| || || | |||||||| || |||| ||||||||| ||| | ||||| Sbjct 10882278 CCCTGGCCCCCACTCAGGAATGAATTCAAGTATTTCCAAAAAATGACCACAACCTCTTCA 10882337 Query 2254 ACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 || ||||||||| | || |||||||| || ||||| ||||| || |||| | Sbjct 10882338 GTAGAAGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TG 10882395 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTA 2356 ||||| | | ||||| || ||||||| ||| | ||||| |||| Sbjct 10882396 AAAAGAATCGACCTTTAAAGGACAGAATTAATGTAGTTCTTAGTA 10882440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414362945683996