Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq15374 91.5 1e-13 seq20873 86.0 5e-12 seq1558 86.0 5e-12 seq16296 84.2 2e-11 >seq1 Length=29265399 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | |||| ||| || || |||||| || || || || || | | Sbjct 23783156 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 23783097 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||| ||||| ||||| || || ||||||||||| | ||| Sbjct 23783096 AGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 23783037 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || || ||| ||| || ||| | || | | || ||||| | |||||| Sbjct 23783036 TCCCT-TCCTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 23782978 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||| | || || ||||| || || |||||||||||||| || Sbjct 23782977 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 >seq15374 Length=4994092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || || | ||| || || | || || ||||| ||||| ||||| Sbjct 172875 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAA 172816 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | ||| | | || || ||| ||| || ||| | | Sbjct 172815 GATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATT 172756 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||||| | |||||| |||| ||||| | || || ||||| || || || Sbjct 172755 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 172696 Query 39273 AAAGATTTGCATCTT 39287 ||| |||||||| || Sbjct 172695 AAAAATTTGCATTTT 172681 >seq20873 Length=9479699 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39061 CCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGT 39120 || || ||||| | |||| || || || |||||| || || | || || | ||| Sbjct 8324300 CCCCTCAAGCGGAGGACCAGGTGCAGGGTCTACTCTTTGTGGATGCTGTAGTCAGAAAGA 8324359 Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCAC 39179 || || | || || ||||| ||||| ||||| || || | ||||||||| || ||| | Sbjct 8324360 GTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCACTGCTGGTCAGGGGGGGAT 8324419 Query 39180 GCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 || ||||| ||| || || | || | || | | ||||| || | |||||| Sbjct 8324420 GCCTTCTTTATCCTGAATCTTGGCCCCTTCACATTCTCAATGGTATCACTGGGCTCCACC 8324479 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| ||||| | || || ||||| || || |||||||||||||| || || Sbjct 8324480 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGAC 8324532 >seq1558 Length=6673444 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || ||||| | |||| || || || |||||| || || || || || | Sbjct 2790705 AGCCACCCCTCAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 2790646 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||| || || | || || ||||| |||| ||||| || || |||||||| || | || Sbjct 2790645 AAAGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGG 2790586 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || || || ||| ||| || || | || | || | ||| | ||||| Sbjct 2790585 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCA 2790526 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | |||| ||||| | || || ||||| || || |||||||||||||| || || Sbjct 2790525 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGAC 2790471 >seq16296 Length=2251693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || || ||||| | Sbjct 936307 GCCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAATCCGA 936366 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || || | || || |||||||||||| ||||||| |||||||||||||| ||||| Sbjct 936367 AAGGGTGCGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACGCTGCTGGTCAGGTGG 936426 Query 39176 G 39176 | Sbjct 936427 G 936427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429427606374107