Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23]
22,539 sequences; 2,798,152,141 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
seq15374 91.5 1e-13
seq20873 86.0 5e-12
seq1558 86.0 5e-12
seq16296 84.2 2e-11
>seq1
Length=29265399
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || || | ||| | |||| ||| || || |||||| || || || || || | |
Sbjct 23783156 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 23783097
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || | ||| ||||| ||||| || || ||||||||||| | |||
Sbjct 23783096 AGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 23783037
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || || || ||| ||| || ||| | || | | || ||||| | ||||||
Sbjct 23783036 TCCCT-TCCTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 23782978
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|||| ||||| | || || ||||| || || |||||||||||||| ||
Sbjct 23782977 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928
>seq15374
Length=4994092
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
|||||| || || || || || | ||| || || | || || ||||| ||||| |||||
Sbjct 172875 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAA 172816
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || ||||||||||| | ||| | | || || ||| ||| || ||| | |
Sbjct 172815 GATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATT 172756
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | | || ||||| | |||||| |||| ||||| | || || ||||| || || ||
Sbjct 172755 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 172696
Query 39273 AAAGATTTGCATCTT 39287
||| |||||||| ||
Sbjct 172695 AAAAATTTGCATTTT 172681
>seq20873
Length=9479699
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/233 (69%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 39061 CCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGT 39120
|| || ||||| | |||| || || || |||||| || || | || || | |||
Sbjct 8324300 CCCCTCAAGCGGAGGACCAGGTGCAGGGTCTACTCTTTGTGGATGCTGTAGTCAGAAAGA 8324359
Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCAC 39179
|| || | || || ||||| ||||| ||||| || || | ||||||||| || ||| |
Sbjct 8324360 GTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCACTGCTGGTCAGGGGGGGAT 8324419
Query 39180 GCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
|| ||||| ||| || || | || | || | | ||||| || | ||||||
Sbjct 8324420 GCCTTCTTTATCCTGAATCTTGGCCCCTTCACATTCTCAATGGTATCACTGGGCTCCACC 8324479
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290
|||| ||||| | || || ||||| || || |||||||||||||| || ||
Sbjct 8324480 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGAC 8324532
>seq1558
Length=6673444
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115
|||| || || ||||| | |||| || || || |||||| || || || || || |
Sbjct 2790705 AGCCACCCCTCAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 2790646
Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175
||| || || | || || ||||| |||| ||||| || || |||||||| || | ||
Sbjct 2790645 AAAGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGG 2790586
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | || || || ||| ||| || || | || | || | ||| | |||||
Sbjct 2790585 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCA 2790526
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290
| |||| ||||| | || || ||||| || || |||||||||||||| || ||
Sbjct 2790525 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGAC 2790471
>seq16296
Length=2251693
Score = 84.2 bits (92), Expect = 2e-11
Identities = 92/121 (76%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | || | ||||| || || ||| |||||| || || || ||||| |
Sbjct 936307 GCCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAATCCGA 936366
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
||| || || | || || |||||||||||| ||||||| |||||||||||||| |||||
Sbjct 936367 AAGGGTGCGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACGCTGCTGGTCAGGTGG 936426
Query 39176 G 39176
|
Sbjct 936427 G 936427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429427606374107
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |