Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15718 109 4e-19 seq20862 104 2e-17 seq16418 87.8 1e-12 seq15540 82.4 5e-11 >seq15718 Length=2773767 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || || || || ||||||||| | ||||| || Sbjct 1505093 AACATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTATCACTCTCAAGGTTGAACCC 1505034 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 1505033 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1504974 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | || ||||| || ||| Sbjct 1504973 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 1504914 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 1504913 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 1504876 >seq20862 Length=464634 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||||||||| |||||||| ||||| || || ||||||||| | ||||| || |||| Sbjct 291626 CAGATTTTCGTAAAAACCCTTACGGGGAAGACCATCACTCTCAAGGTTGAACCCTCGGAT 291685 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 ||| |||| |||| || || || || ||||| | || || ||||| || Sbjct 291686 ACTACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 291745 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 | | |||||||| ||||| ||||||||||| | || |||| | || |||||||| Sbjct 291746 AGACTGATATTTGCTGGCAAGCAACTGGAAGATGGACATACTTCATCTGACTACAACATT 291805 Query 23794 CAAAA 23798 ||||| Sbjct 291806 CAAAA 291810 >seq16418 Length=1794168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| ||||| || || ||||| || || || || ||| Sbjct 1337913 ATGCAGATTTT-GTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAACCCAGT 1337971 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| ||||| || || | || || || || Sbjct 1337972 GACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCC-GACCAG 1338030 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | |||| | |||||||| ||||||| ||||| || | | |||| | ||| |||||| Sbjct 1338031 CCGCGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAAC 1338090 Query 23791 ATACAAAAAGAGTCCAC 23807 || | ||||||||||| Sbjct 1338091 ATTCGGAAAGAGTCCAC 1338107 >seq15540 Length=10794444 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/207 (70%), Gaps = 11/207 (5%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | ||| |||| || || || || ||||||||| | ||||| || Sbjct 10655593 AAGATGCAGATTTTCATAAAATCCCTTACAGGGAAGACCATCACTCTCCAGGTTGAACCC 10655534 Query 23668 ACGG--ACACTGT---TGA-AATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 ||| ||| ||| ||| || || |||| || || || | ||||| | || Sbjct 10655533 TCGGATACAATGTATCTGAGAAAATGTAAAGGCCAAGATCCAGGATAGGGAAGGAATTCC 10655474 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 || || || || | | || ||||| ||||| ||||||||||| | || ||||| Sbjct 10655473 ACCTGACCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTT--- 10655417 Query 23781 CGATTACAACATACAAAAAGAGTCCAC 23807 || | |||||| ||||| |||||||| Sbjct 10655416 -GACTGCAACATTCAAAAGGAGTCCAC 10655391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337916750769812