Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq20429 141 2e-28 seq15374 141 2e-28 seq15718 140 8e-28 seq1 129 1e-24 seq9001 95.1 3e-14 seq7335 95.1 3e-14 seq16418 87.8 4e-12 >seq20429 Length=9870158 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 2401369 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2401310 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||||||||| ||||| || | || || ||||| || || || ||||||||| Sbjct 2401309 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCT 2401250 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||||||||| || || || || | ||||| ||| Sbjct 2401249 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 2401190 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||| || || | || | |||||| Sbjct 2401189 TTGCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq15374 Length=4994092 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| ||||| || | | ||| | |||||| Sbjct 172896 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 172837 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || || || ||||| || || || |||||||| || Sbjct 172836 TTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATC 172777 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 172776 CTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 172717 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | ||||||||| Sbjct 172716 CTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTT 172681 >seq15718 Length=2773767 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || |||||||| || ||||| | ||||| || | |||||| Sbjct 1504869 ACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 1504928 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| || ||||| ||||| || || |||| ||| || || || ||||| || Sbjct 1504929 ATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCC 1504988 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || || || |||| ||| || | | Sbjct 1504989 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAG 1505048 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | ||||||| || | ||||| || Sbjct 1505049 AGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTT 1505093 >seq1 Length=29265399 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || || || ||||| |||| ||||| || | | ||| | |||||| Sbjct 23783142 CAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 23783083 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | |||||| || || ||||| || || || ||||| || ||| | |||||||| || Sbjct 23783082 TTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGA-TCCCTTCCTTATC 23783024 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 23783023 CTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 23782964 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | ||||||||| Sbjct 23782963 CTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 >seq9001 Length=5528005 Score = 95.1 bits (104), Expect = 3e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| ||| ||||| |||||||||||||||| Sbjct 2186488 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAGTATTTTAGAGATAATG 2186429 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | ||||||||||| |||||||| || || ||| ||||| Sbjct 2186428 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACA 2186389 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||| || ||||| || || ||||| || || |||||||| |||||||| || ||| Sbjct 2186060 TGTCCATCTGTGATAGAAATGACGTTTGTTGGAATGTAAGCAGACACATCACCAGCCTGT 2186119 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||| | || ||||| || || | || |||||||||||| Sbjct 2186120 GTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 2186161 >seq7335 Length=6127795 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCA-AAGTTCTCCC 225557 |||| ||||| | |||||||| || ||||| || ||||| || | || || | ||| Sbjct 5714276 CTCAACACAAGATAAAGAGTGGACTCCTTTTGAACTTTGTAGTCAGACAGAAAATGTCC- 5714334 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||||| || || ||||| ||| | ||| ||| || || || ||||| ||||||| Sbjct 5714335 ATCTTCTAGGTGTTTGCCAGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTT 5714394 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || ||||| || ||||| | || || || || || ||| || | | ||||| Sbjct 5714395 ATCCTGGATTTTGGCCTTCATATTGTCTATTGTATCCAGGGGTTCAACTTTGAGAGTGAT 5714454 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || | | ||||||||| | |||||||| Sbjct 5714455 GGTTTTCCCTGTAAGGGCTTTTATGAAAATCTGCATTTT 5714493 >seq16418 Length=1794168 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 225509 GGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCT 225568 |||| | ||||| ||||| | | ||||| |||| | ||| ||||| || ||| Sbjct 1338115 GGTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCC 1338056 Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 | || || || || || || || | |||||||| ||| | || |||||||||||||| | Sbjct 1338055 GTTTGCCTGCAAATATCAGACGCGGCTGGTCGGGGGGA-TGCCCTCCTTGTCTTGGAT-T 1337998 Query 225629 TTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||| | | ||||||||||| || ||| || || | ||||| ||||||||| Sbjct 1337997 TTGGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTCTTGCCC 1337938 Query 225688 GTCA 225691 |||| Sbjct 1337937 GTCA 1337934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192186819722066