Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq15651 150 1e-31 seq18541 104 2e-17 seq15318 104 2e-17 seq22428 98.7 8e-16 seq21428 91.5 1e-13 >seq15651 Length=9404055 Score = 150 bits (166), Expect = 1e-31 Identities = 133/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| ||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 6566932 TAGACCGGTGAGGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 6566991 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || |||||||| || |||| |||||| |||||||| || ||||| |||| Sbjct 6566992 CACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 6567051 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||| || ||||| || | ||| || |||||||| || ||||| ||| Sbjct 6567052 CACATAGAACTGGCAGAGGGCGTGACACGGAGGCAGCGCCATCAGA 6567097 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||| | ||| ||| Sbjct 6570654 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAAT 6570713 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||| |||||||| ||| || |||||||||||||| || || ||||| Sbjct 6570714 CCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCGTCCCAGATTTTGACTCCCTTGGAA 6570773 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | ||||||||| || Sbjct 6570774 GACAGTTCTTTAGCGTTTGTGGATCC 6570799 >seq18541 Length=1048218 Score = 104 bits (114), Expect = 2e-17 Identities = 181/260 (70%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || | || || ||||| || | ||||| | Sbjct 494075 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTACTAAGAACTACATTAATTCTGTCCTT 494134 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| ||||||||| || ||||||||||| ||||| |||||||| ||||||| || Sbjct 494135 TAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 494194 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | ||||| | | || | || || || || | Sbjct 494195 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTTGGAAATACTTGAATTCATTCC 494254 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 ||| || ||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 494255 TGAGT------GGGGCCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GAC 494307 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 494308 ACAGCGACGATGCAGTTTAG 494327 >seq15318 Length=11437517 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 114296 CTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 114355 || || ||||| || | ||||| | | ||||| ||||||||| || ||||||||||| Sbjct 10882438 CTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAG 10882379 Query 114356 GTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAG 114415 ||||| |||||||| ||||||| ||||| |||||| | ||||| || | ||||| Sbjct 10882378 GTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 10882319 Query 114416 GCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTG 114475 | | || | || || || || | ||| || |||| ||||| || ||||| Sbjct 10882318 TTTTGGAAATACTTGAATTCATTCCTGAGT------GGGGGCCAGGGCAGGTCCCCGTTC 10882265 Query 114476 TTCCCGATGCCCATG-TCT-GGACAC 114499 || || ||||||||| ||| |||||| Sbjct 10882264 TTGCCAATGCCCATGTTCTGGGACAC 10882239 >seq22428 Length=10093839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| | || || || || || || || || ||||| || | ||||| | Sbjct 7166811 ATGAGCTCCTTGTGTAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 7166870 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| ||||||||| || ||||||||||| ||||| |||| ||| ||| ||| || Sbjct 7166871 TAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACTCATAATCGCCAGATT 7166930 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | ||||| || | ||||| | | || | || || || || | Sbjct 7166931 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 7166990 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 ||| || |||| ||||| || || || || || ||||||||| ||| |||||| Sbjct 7166991 GAGT------GGGGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTCTGGGACAC 7167044 >seq21428 Length=20122155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || || || ||||| || | ||||| | | ||||| ||||||||| || Sbjct 2439326 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGA 2439267 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 2439266 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 2439219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406051629380554