Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2225 158 1e-33 seq15174 125 6e-24 seq21428 122 7e-23 seq14574 114 1e-20 seq11110 111 1e-19 seq19918 104 2e-17 >seq2225 Length=8022615 Score = 158 bits (174), Expect = 1e-33 Identities = 365/542 (67%), Gaps = 20/542 (4%) Strand=Plus/Plus Query 4461 AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGT 4520 ||||| |||||||| | | || | | ||||| ||||||| | | | | |||||| Sbjct 9444 AACTCCTGTTCTATCCTATCAGCATTGATAATTATTTCTTTTACTCTCTGCTCGGATGGT 9503 Query 4521 TTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTG 4580 || | ||| | | | ||| | || ||||| ||||| || ||||| || |||||| Sbjct 9504 TTGTGTACCAGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTG 9563 Query 4581 CTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAAT 4640 ||||| ||||| | |||| || | |||||| | || | || || ||||| || Sbjct 9564 CTAATAAGTTCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAAC 9623 Query 4641 ATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTA-ATCG 4699 || | |||||||| | |||||||| |||||||| || |||||||| ||| | | || Sbjct 9624 ATTGATGCAAATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGT 9683 Query 4700 GGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT 4758 | | | | ||| ||||||| | |||| || ||||| | || || |||| Sbjct 9684 TG----GTAGGCAGC-CTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCT 9738 Query 4759 TAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTT-TTTCAAATGGGTCT 4814 | ||||| || | | | || ||| | || |||| |||| ||| ||| ||| Sbjct 9739 TCACGCAAGGCAGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCTTTGAAA----TCT 9794 Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874 | ||| ||||| || || | |||||||| |||||| |||| |||| | ||||| Sbjct 9795 TTAAT----GTGTCCATAAGCA-ACTATACATCTCAGAAGGTATGTTTTACGTGGCAATT 9849 Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934 || || || || || || |||||||| | |||||||| | | || | || || Sbjct 9850 TGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACC 9909 Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAG 4994 |||| || |||||| | |||||||| |||||||| || |||| |||| | || |||| | Sbjct 9910 CAGTTGTCATTTACTCTGCCGTCACTTGCTGCAAAGAAAGCCAGAACACGCGACATAAGG 9969 Query 4995 TA 4996 || Sbjct 9970 TA 9971 >seq15174 Length=1580434 Score = 125 bits (138), Expect = 6e-24 Identities = 207/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || || || || ||||| || || | ||| | || || |||||| || ||||||| | Sbjct 203670 GTGAAGACAGACATTCAGATAGCTCTTCCTGCTGGATGTTACGGAAGAGTAGCTCCACGT 203729 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||||| ||||| || || || || ||||| |||||| ||| ||| Sbjct 203730 TCTGGCTTGGCTGCCAAACATTTTATAGATGTAGGAGCTGGTGTCATAGATGAAGATTAT 203789 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||||||| ||||| |||| ||||||||||||| |||||| | | || ||||| Sbjct 203790 AGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TAAAA 203846 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGTA 32008 || || ||| || | || || || ||||| ||| || || ||||||||| | Sbjct 203847 AAAGGTGATCGGATTGCGCAGCTTATTTGTGAACGGATTTTTTATCCAGAAATAGAAGAA 203906 Query 32009 GCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAA 32064 | | | | | ||| ||| ||||||| | ||| ||||| || || ||||| Sbjct 203907 GTTCAAGTTTTGGATGACACTGAAAGAGGTTCAGCAGGTTTTGGTTCCACTGGAAA 203962 >seq21428 Length=20122155 Score = 122 bits (134), Expect = 7e-23 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 31781 GATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTG 31840 || ||||| || || | ||| | || || |||||| || ||||||| | ||||| ||| Sbjct 2235818 GACATTCAGATAGCTCTTCCTGCTGGATGTTACGGAAGAGTAGCTCCATGTTCTGGCTTG 2235877 Query 31841 GCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAAC 31900 || | ||||| ||||| || || || || ||||| |||||| ||| ||||||||||| Sbjct 2235878 GCTGCCAAACATTTTATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAAT 2235937 Query 31901 GTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGGGCGAT 31957 ||||| |||| ||||||||||||| |||||| | | || ||||||| || ||| Sbjct 2235938 GTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TAAAAAAAGGTGAT 2235994 Query 31958 AGGGTAGCTCAACTAATTTGCGAA 31981 || | || || || ||||| ||| Sbjct 2235995 TGGATTGCGCAGCTCATTTGTGAA 2236018 >seq14574 Length=3519100 Score = 114 bits (126), Expect = 1e-20 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || || || || ||||| || || | ||||| || || || ||| || ||||||| Sbjct 1299493 GTGAAGACAGACATTCAGATAGCTCTTCCTTCTGGATGTTATGGAAGAGTAGCTCCACAT 1299434 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||||| |||| || || || || ||||| |||||| ||| ||| Sbjct 1299433 TCTGGCTTGGCTGCCAAACATTTTACAGATGTAGGAGCTGGTGTCATAGATGAAGATTAT 1299374 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||||||| ||||| |||| ||||||||||||| |||||| | | || ||||| Sbjct 1299373 AGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TAAAA 1299317 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || || ||| || | || || || ||||| ||| Sbjct 1299316 AAAGGTGATCGGATTGCGCAGCTCATTTGTGAA 1299284 >seq11110 Length=21012544 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || ||||| || ||||| || | || ||||| | ||||||||| | Sbjct 1790676 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 1790617 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| ||||| || || || ||||| || |||||||| || ||||| | Sbjct 1790616 TCAGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1790557 Query 4690 CTAC 4693 | || Sbjct 1790556 CCAC 1790553 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || |||||||| ||||| |||| ||| ||||| |||||| Sbjct 1797544 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATGTTTTCC 1797485 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1797484 ATAAAATCAAAGGGATT 1797468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 1785554 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1785498 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| || | || || | ||||| || |||||||| || | ||| || | Sbjct 1785497 TGTGAGAGATAAAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1785438 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 1785437 ATAAGTCGAC 1785428 >seq19918 Length=441265 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | |||||||| | |||| || || Sbjct 48686 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 48745 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 48746 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 48805 Query 4692 AC 4693 || Sbjct 48806 AC 48807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 50469 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 50528 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | ||||||||| | |||||||| | | ||||| Sbjct 50529 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATC 50583 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 63918 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 63977 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | ||||||||| | |||||||| | | ||||| Sbjct 63978 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATC 64032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426932292010487