Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2225 181 1e-40 seq15174 129 8e-25 seq19918 125 1e-23 seq21428 118 1e-21 seq14041 114 2e-20 seq14574 111 2e-19 seq11110 102 1e-16 >seq2225 Length=8022615 Score = 181 bits (200), Expect = 1e-40 Identities = 358/527 (68%), Gaps = 11/527 (2%) Strand=Plus/Plus Query 48042 GCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTT 48101 ||||| || || ||||| ||||| || | |||||| | ||||| | |||| | Sbjct 9432 GCCTCAGTGAGGAACTCCTGTTCTATCCTATCAGCATTGATAATTATTTCTTTTACTCTC 9491 Query 48102 TCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGA 48161 | ||| |||| | | || |||||| |||| | || ||||| ||||| || | | Sbjct 9492 TGCTCGGATGGTTTGTGTACCAGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAA 9551 Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 || |||||||| ||||| | ||| | |||||||||| |||||| ||||| | ||| Sbjct 9552 CCCTCATCTCTGCTAATAAGTTCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTC 9611 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 |||||||| || |||| || || || | |||||||| |||||||| || || ||||| Sbjct 9612 TTGAGCCAGAACATTGATGCAAATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAG 9671 Query 48282 GCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA---TCCACCGTTGTGCCCAATCA 48338 || | || | | ||| || || |||| |||| || |||||||| Sbjct 9672 GCTGCAACA---TGTTGGTAGGCAGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCT 9728 Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTG 48398 ||||||||||| || ||||||| |||| || || | |||||||| | |||| ||| Sbjct 9729 GCCTTCTTCTTCACGCAAGGCAGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCTTTG 9788 Query 48399 CTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATT 48458 ||||||| | || || | ||| ||||||||| || || | || |||| | Sbjct 9789 AAATCTTTA----ATGTGTCCA-TAAGCAACTATACATCTCAGAAGGTATGTTTTACGTG 9843 Query 48459 GCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGT 48518 || || || || || || ||||| |||||||| ||||| || || | || || Sbjct 9844 GCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGC 9903 Query 48519 TCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 || || | || ||||||||| | || ||||| || ||||| || || Sbjct 9904 TCCACCCAGTTGTCATTTACTCTGCCGTCACTTGCTGCAAAGAAAGC 9950 >seq15174 Length=1580434 Score = 129 bits (142), Expect = 8e-25 Identities = 247/358 (69%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | |||||||||| |||| | | ||| ||||| Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAAC--CTCTTTCAGTGTCATCCAAAACTTGAACTTCT 203903 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || |||| | | || || || || || | |||||| | ||| Sbjct 203902 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTT 203843 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 203842 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 203783 Query 46054 TCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || | ||| || || ||||| | ||| Sbjct 203782 TCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGGA 203723 Query 46111 GCTATTCTTCCATAACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCTC 46170 |||| |||||| ||||| || | || ||| |||| ||||| || | ||| | Sbjct 203722 GCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAA-CAG 203665 Query 46171 CTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226 ||||||| || || || || || || || |||||||| | || || || || || Sbjct 203664 TTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 203607 >seq19918 Length=441265 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 48686 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 48745 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 48746 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 48804 Score = 102 bits (112), Expect = 1e-16 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| Sbjct 46806 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 46865 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | |||||||| || || | ||||| || || ||||| || |||| || ||| || Sbjct 46866 CATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTGCAGTGAAAT 46925 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 46926 ATTCTCCATAAAGTCAAATGGATT 46949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 50458 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 50517 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 50518 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 50572 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 63907 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 63966 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 63967 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 64021 >seq21428 Length=20122155 Score = 118 bits (130), Expect = 1e-21 Identities = 234/340 (69%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||| | | ||| ||||| Sbjct 2236099 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCCAAAACTTGAACTTCT 2236042 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || | || | | || || || || || | |||||| | ||| Sbjct 2236041 TCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATCACCTTTTTTT 2235982 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 2235981 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 2235922 Query 46054 TCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || | ||| || || ||||| | ||| Sbjct 2235921 TCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACATGGA 2235862 Query 46111 GCTATTCTTCCATAACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCTC 46170 |||| |||||| ||||| || | || ||| |||| ||| | || | ||| | Sbjct 2235861 GCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTATCTTCA-CAA-CAG 2235804 Query 46171 CTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 ||||||| ||| || || || || || || |||||||| Sbjct 2235803 TTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 2235764 >seq14041 Length=6761596 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || || Sbjct 1441092 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 1441151 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || ||||| || |||||| ||||| | ||| | ||||||| Sbjct 1441152 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 1441211 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 1441212 ATATGCTGTGGTCTTTCAGCC 1441232 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | || Sbjct 1419827 TGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 1419886 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 1419887 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1419946 Query 77247 TTTCTGAGACCAT 77259 || || | ||||| Sbjct 1419947 TTGCTTATACCAT 1419959 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | || | ||| Sbjct 1430286 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 1430345 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || |||||||| ||| Sbjct 1430346 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGT 1430405 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 1430406 TCCAGGTAGATAGC 1430419 >seq14574 Length=3519100 Score = 111 bits (122), Expect = 2e-19 Identities = 235/344 (68%), Gaps = 19/344 (6%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | ||| |||| |||| | | ||| ||||| Sbjct 1299203 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTCCAGTGTCATCCAAAACTTGAACTTCT 1299260 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || | || | | || || || || || | |||||| | ||| Sbjct 1299261 TCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATCACCTTTTTTT 1299320 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 1299321 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1299380 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| | | ||| || || ||||| ||| Sbjct 1299381 TCATCTATGACACCAGCTCCTACATCTGTAAAATGTTTGGCAGCCAAGCCAGAATGTGGA 1299440 Query 46111 GCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| |||||||||| ||||| || | || ||| |||| ||||| || | ||| Sbjct 1299441 GCTACTCTTCCATAACATCCAGAA----GGAAGAGCTATCTGAATGTCTGTCTTCA-CAA 1299495 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 | ||||||| || || || || || || || |||||||| Sbjct 1299496 -CAGTTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTA 1299538 >seq11110 Length=21012544 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 1790676 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 1790617 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || |||||||| || ||||| || |||||||| || ||||| | Sbjct 1790616 TCAGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1790557 Query 48283 C 48283 | Sbjct 1790556 C 1790556 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| |||||||| ||||||||||| || |||||||| ||||| | || |||| Sbjct 1785545 CCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 1785486 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633 ||||||| || | || | || || ||||||| | || ||| ||||||| Sbjct 1785485 AATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 1785435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694473085748960