Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11110 123 4e-23 seq19918 116 5e-21 seq14041 109 8e-19 seq15174 107 3e-18 seq21428 102 1e-16 seq14574 102 1e-16 >seq11110 Length=21012544 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| |||||||||||||| || || | ||| | Sbjct 1790676 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 1790617 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | |||||||||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1790616 TCAGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1790557 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 1790556 CCACCACTCTTTCCCC 1790541 >seq19918 Length=441265 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 48686 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 48745 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| |||||||| || || || || || Sbjct 48746 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 48805 Query 46774 ACAA 46777 |||| Sbjct 48806 ACAA 48809 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 >seq14041 Length=6761596 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | || Sbjct 1419827 TGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 1419886 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 1419887 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1419946 Query 75842 TTTCTGAGACCAT 75854 || || | ||||| Sbjct 1419947 TTGCTTATACCAT 1419959 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || ||||| || || | || Sbjct 1446602 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGATG 1446661 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || || |||| || || |||||||||| | Sbjct 1446662 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCCGTTTCAGCAGCCAAAGTATCTAGT 1446721 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 |||| || || || || |||||| ||||| || |||||||||| Sbjct 1446722 TCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCATGG 1446767 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| | |||||||| || || Sbjct 1441092 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 1441151 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || || || || |||||| ||||| | || | ||||||| Sbjct 1441152 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 1441211 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 1441212 ATATGCTGTGGTCTTTC 1441228 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 1429767 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 1429826 Query 76570 CATCAATGACCACTC 76584 ||| || ||||| || Sbjct 1429827 CATTAAAGACCAGTC 1429841 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 || || ||||| || || || | || || |||||||| ||||| || || | |||||| Sbjct 1424901 GCCAGGTCGCAGCTGGCTTCCAGAGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTC 1424960 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 | ||| || || |||| ||||||||||| | || ||||| |||||||| || Sbjct 1424961 AATAATTGGGCCTCTGGACTCTCAAAAGGATATCTCATCAGGATAAAAGCATCTGCCAGA 1425020 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || || || ||||| ||||| || | ||| | ||||| || Sbjct 1425021 CCTTGTACCCCAATCCCAATGGGGCGATGGCGTTTATTTGA 1425061 >seq15174 Length=1580434 Score = 107 bits (118), Expect = 3e-18 Identities = 211/308 (69%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| |||| || |||||| | || |||| | | || || || || || | ||| Sbjct 203912 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATC 203853 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 |||| | |||| || ||| | ||||| ||| ||| | || | || |||| || || Sbjct 203852 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 203793 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATC---AATACCTTTTAGAGAAAGACC 44587 ||||||||||||||||| || ||| |||| ||||| || | ||| || | || Sbjct 203792 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCC 203733 Query 44588 CGATCTAGGCGCTATTCTTCCATAACAGAATTTTGGCATAGACATACGAATATCTGTTTT 44647 || | || |||| |||||| ||||| || | || || |||| ||||| || Sbjct 203732 AGAACGTGGAGCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTT 203673 Query 44648 AATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCATAT 44705 | |||| || ||||||| || || || || ||||| || |||||||| | || || Sbjct 203672 CA-CAACAGT-TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAG 203615 Query 44706 CCTGCCGC 44713 || || || Sbjct 203614 CCCGCAGC 203607 >seq21428 Length=20122155 Score = 102 bits (112), Expect = 1e-16 Identities = 199/290 (69%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| |||| || |||||| | || | || | | || || || || || | ||| Sbjct 2236051 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATC 2235992 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 |||| | |||| || ||| | ||||| ||| ||| | || | || |||| || || Sbjct 2235991 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 2235932 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATC---AATACCTTTTAGAGAAAGACC 44587 ||||||||||||||||| || ||| |||| ||||| || | ||| || | || Sbjct 2235931 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCC 2235872 Query 44588 CGATCTAGGCGCTATTCTTCCATAACAGAATTTTGGCATAGACATACGAATATCTGTTTT 44647 || | || |||| |||||| ||||| || | || || |||| ||| | || Sbjct 2235871 AGAACATGGAGCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTATCTT 2235812 Query 44648 AATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTA 44695 | |||| || ||||||| ||| || || || ||||| || |||||||| Sbjct 2235811 CA-CAACAGT-TTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 2235764 >seq14574 Length=3519100 Score = 102 bits (112), Expect = 1e-16 Identities = 202/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| |||| || |||||| | || | || | | || || || || || | ||| Sbjct 1299251 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATC 1299310 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 |||| | |||| || ||| | ||||| ||| ||| | || | || |||| || || Sbjct 1299311 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 1299370 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATC---AATACCTTTTAGAGAAAGACC 44587 ||||||||||||||||| || ||| |||| ||||| || | ||| || | || Sbjct 1299371 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTGTAAAATGTTTGGCAGCCAAGCC 1299430 Query 44588 CGATCTAGGCGCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTG 44643 || || |||| |||||||||| ||||| || | || || |||| |||| Sbjct 1299431 AGAATGTGGAGCTACTCTTCCATAACATCCAGAA----GGAAGAGCTATCTGAATGTCTG 1299486 Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTA 44695 | || | |||| || ||||||| || || || || ||||| || |||||||| Sbjct 1299487 TCTTCA-CAACAGT-TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTA 1299538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712733539644480