Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20429 131 4e-25 seq15374 118 2e-21 seq1 118 2e-21 seq1558 104 5e-17 seq15718 93.3 1e-13 seq2224 93.3 1e-13 >seq20429 Length=9870158 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || || || ||||| || ||||||||||| || | | || Sbjct 2401378 CTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 2401319 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||| || ||||| ||||||||||| || | | ||| || Sbjct 2401318 CGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCC 2401259 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || ||| |||||| |||| | | |||| ||| || || || Sbjct 2401258 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGG 2401199 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| || |||||||| |||| ||||||| Sbjct 2401198 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq15374 Length=4994092 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| || | | ||| | ||||||| Sbjct 172895 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 172836 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||| ||||||||| | | ||| |||||||| || Sbjct 172835 TCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCC 172776 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| |||| | | |||| ||| || || || || || || Sbjct 172775 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 172716 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| || | |||||||| Sbjct 172715 TTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTT 172681 >seq1 Length=29265399 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || |||||||| ||||||||||| || | | ||| | ||||||| Sbjct 23783141 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 23783082 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| |||| ||||||||| | | ||| |||||||| || Sbjct 23783081 TCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAG-GGGGATCCCTTCCTTATCC 23783023 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| |||| | | |||| ||| || || || || || || Sbjct 23783022 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 23782963 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| |||| |||||||| Sbjct 23782962 TTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 >seq1558 Length=6673444 Score = 104 bits (114), Expect = 5e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 2790689 GAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 2790630 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || | || ||||| |||| |||||| || | | ||| |||||||| || Sbjct 2790629 TTCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATC 2790570 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||| ||| | | ||| ||| ||| || || || || || Sbjct 2790569 CTGGATCTTGGCCTTCACATTCTTGATGGTGTTGCTG--GGCTCCACCTCCAGGGTGATG 2790512 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||||| Sbjct 2790511 GTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 2790474 >seq15718 Length=2773767 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| Sbjct 1504873 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 1504932 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || || || || || ||||| || | | ||||||||| Sbjct 1504933 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 1504992 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || || || || | ||||| Sbjct 1504993 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTG 1505052 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || || || || || | |||||| || Sbjct 1505053 ATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTT 1505093 >seq2224 Length=17281721 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || |||||||||||||||||||| || | | || |||||| Sbjct 757880 GAGGACCAGGTGCAGGGTTGACTCTTTTTGGATGTTGTAGTCAGAAAGAGCGTGCCCATC 757939 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || || ||||| |||| ||||||||| | | | | |||||||| || Sbjct 757940 TTCCAGCTACTTACCTGCAAAGATGAGCCGCTGCTGGTCAGGAGGGGTCCCTTCCTTATC 757999 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || || || || || |||| | | |||| ||| ||| || || || | || Sbjct 758000 CTGGATCTTGGCCTTCTCATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGCGAT 758056 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || | ||| || || ||||| ||||| | |||||| Sbjct 758057 GGTCTCGCCAGTCAGGGTCTTGACGAAAATCTGCAT 758092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153487598547669