Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq14430 188 1e-42 seq21317 127 3e-24 >seq14430 Length=2197182 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||||||||| ||||||||| || || ||||| || ||||||||||| Sbjct 1559805 GTCTGGAACAACTGCTCGTCACCCCATTCTGGGTGCTCCTGTTTAAGCACATCGCACACT 1559746 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||| ||||||| |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 1559745 CGGTTATGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAG 1559686 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || || | || || |||||||| | | Sbjct 1559685 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGGTAGATCATCTCC 1559626 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| ||||| || | ||| || |||| ||| || ||||| |||| Sbjct 1559625 ACCTGAGTATCTTTCACTGTGGGAGGGTACACTTCTCCATCAATGATCT 1559577 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1558636 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1558577 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || || || || ||| |||| || |||||||| | || |||||||||||||| Sbjct 1558576 AAACTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 1558517 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | |||| |||||| |||||||||||| | | | ||| || |||| Sbjct 1558516 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAACCTCTTTTGAATCAGGAAGCTC 1558457 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | || |||| || ||||| Sbjct 1558456 CTTCTTCCCTGAAAAATGAGAA 1558435 Score = 125 bits (138), Expect = 1e-23 Identities = 213/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 ||| ||||| ||||| || || ||||| ||||| || || | |||| |||||||| Sbjct 1561496 ATCTGGAACGTTGAACGAAGCAAAGGGACAGCCCTTCACATTATTGCAGATGAGAGACTG 1561437 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 ||| | || | |||| ||| || || || ||||| || || ||||| |||||||| Sbjct 1561436 AATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTTGGCTTCCA 1561377 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 ||| | || || || || || |||| || ||||| | |||||| || || || | Sbjct 1561376 GTAGTCAGGAGAACATATAGTATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAC 1561317 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | ||| | ||||| |||||||| | ||||| ||||| || |||| | || | Sbjct 1561316 TTCTACCATGGTTTCACCAAAGATGGCATCTGGACGAGGCTTCTCTACCAGCAGGCCAGG 1561257 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 || ||||||| || || | ||| || || || || | || || || |||||||| Sbjct 1561256 ATATAGCTCCATGGCGTCAATGTCACCATAGAGTGCTTCCAACTCCGCGGCCATCTCCTT 1561197 Query 8578 TTCTCCTGT 8586 || ||||| Sbjct 1561196 CTCACCTGT 1561188 Score = 100 bits (110), Expect = 4e-16 Identities = 188/273 (69%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 8938 GGCACA---CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATG 8994 |||||| ||||| | || || |||||||| ||||| ||||| || | |||||||| Sbjct 1560414 GGCACAATGCTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCAACGAACTGGGTAAGT 1560355 Query 8995 CCGTGAGTCATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTA 9054 ||||| || ||||| || ||||| |||| || | |||| || | | | Sbjct 1560354 CCGTGTTCCAGTAGTATAGAGTTGTTATAGAGAAACTGCTGATAGTTGTATTCCTGATCA 1560295 Query 9055 TCAATCTCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAA 9114 ||||| | ||| || ||||||| || | ||||||||||| | | |||||||||| | | Sbjct 1560294 TCAATTTGAAAGGCGTCCGGCAGAAGGGGGTGCCAGTGATAGAGCGTGTTAAACTCAGCA 1560235 Query 9115 AATATACGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAG 9173 ||||| || ||||||||||| | | ||| ||||| || || | |||| ||| Sbjct 1560234 GCGATACGGTTCTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAG 1560176 Query 9174 CTGAAAATGGTAGCCGCTGAGCTGCTGAACGTA 9206 | || || ||||| || | ||||| || || Sbjct 1560175 TTTGAAGTGATAGCCACTCAAGTGCTGTACATA 1560143 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | || || ||||| || || | Sbjct 1557744 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 1557685 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || ||||| |||||||||||| ||| |||||| | ||||| | Sbjct 1557684 TAATAGGAGAGGTTAGAGAATGCTTCCCAGCTTTTGTAGCCGTAGTGTGTATTGTAAGTC 1557625 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| |||||| |||| Sbjct 1557624 GGTGGACTATCAATCAAATGGGATCTGGCTGA 1557593 >seq21317 Length=8723464 Score = 127 bits (140), Expect = 3e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| |||| || || || || ||||| |||||||||||| | || || Sbjct 1656504 TTGACAATGTTGAAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 1656563 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| | | ||| ||||||||||| || |||||||||| ||| | || ||| Sbjct 1656564 CAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTC 1656623 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||| ||| || || |||||| | | | || | ||| | ||||| Sbjct 1656624 TCCCCAAAGATGGAGTTCGGTAGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAG 1656683 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||||||||| || || | || || || |||||| | ||||||| Sbjct 1656684 GCATCGATGTCTCCGTACAGCTCCTCCAACTCTGCTGCCATCTCCCTCTCTCCTG 1656738 Score = 127 bits (140), Expect = 3e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| |||| || || || || ||||| |||||||||||| | || || Sbjct 1662513 TTGACAATGTTGAAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 1662572 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| | | ||| ||||||||||| || |||||||||| ||| | || ||| Sbjct 1662573 CAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTC 1662632 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||| ||| || || |||||| | | | || | ||| | ||||| Sbjct 1662633 TCCCCAAAGATGGAGTTCGGTAGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAG 1662692 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||||||||| || || | || || || |||||| | ||||||| Sbjct 1662693 GCATCGATGTCTCCGTACAGCTCCTCCAACTCTGCTGCCATCTCCCTCTCTCCTG 1662747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716674828922560