Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15374 159 8e-34 seq1 150 4e-31 seq20429 132 1e-25 seq20873 127 5e-24 seq16418 114 3e-20 seq16984 89.7 1e-12 >seq15374 Length=4994092 Score = 159 bits (176), Expect = 8e-34 Identities = 167/217 (77%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| ||||| || || || || || || |||||||| |||||||| Sbjct 172681 AAAATGC---AAATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA- 172736 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| || ||| ||||| ||||| || ||||| ||||| | Sbjct 172737 -GCCCAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCC 172795 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| || || ||||| || || || ||||| |||||||| | |||||| | | Sbjct 172796 CTGACCAGCAGCGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTG 172855 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| ||||| || || ||||| || || Sbjct 172856 ACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 172892 >seq1 Length=29265399 Score = 150 bits (166), Expect = 4e-31 Identities = 166/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || ||||| || || || || || || |||||||| |||||||| Sbjct 23782928 AAAATGC---AAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA- 23782983 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| || ||| ||||| ||||| || ||||| ||||| | Sbjct 23782984 -GCCCAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCC-C 23783041 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| || || ||||| || || || ||| | |||||||| | |||||| | | Sbjct 23783042 CTGACCAGCAGCGGCTCATCTTTGCAGGCAAGCAGGTGGAAGATGGGCGCACTCTTTCTG 23783101 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| ||||| || || |||||||| || Sbjct 23783102 ACTACAACATCCAGAAAGAGTCGACCCTGCATCTGGT 23783138 >seq20429 Length=9870158 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 2401161 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 2401218 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| || ||||| || || |||||||| || |||| Sbjct 2401219 ACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGC 2401278 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 2401279 AGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2401338 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 2401339 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGA 2401379 >seq20873 Length=9479699 Score = 127 bits (140), Expect = 5e-24 Identities = 166/225 (74%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| || ||||| || || || || || || |||||||| |||| Sbjct 8324534 AGGTCAAAATGC---AAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 8324478 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAA--AAGATTCAGGACAAAGAAGGA 178025 |||| || ||| | ||||| ||||| || || ||||||||||| |||||||| Sbjct 8324477 TGGA--GCCCAGTGATACCATTGAGAATGTGAAGGGGCCAAGATTCAGGATAAAGAAGGC 8324420 Query 178026 AT-CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 || ||| || |||||||| | || ||||| || || || ||||| |||||||| | || Sbjct 8324419 ATCCCCCCCTGACCAGCAGTGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCAC 8324360 Query 178085 TCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| | || || | | |||| ||||| | || ||||| || || Sbjct 8324359 TCTTTCTGACTACAGCATCCACAAAGAGTAGACCCTGCACCTGGT 8324315 >seq16418 Length=1794168 Score = 114 bits (126), Expect = 3e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || |||||||| ||||| ||| | ||| Sbjct 1337916 CAGATTTT-GTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAACCCAGTGAC 1337974 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||||| || || || ||||| || || ||||| || ||||||| Sbjct 1337975 ACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCC-CCCGACCAGCCG 1338033 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || |||| ||| || ||||| |||||| |||| || ||| | Sbjct 1338034 CGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAACATT 1338093 Query 178104 CAAAAAGAATCAACACTGCA 178123 | ||||| || || |||| Sbjct 1338094 CGGAAAGAGTCCACCGTGCA 1338113 >seq16984 Length=22061292 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCG 177990 ||||| || || || || || || |||||||||||||| | ||| || ||||||| | Sbjct 20914103 GTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCGACACCACTG 20914160 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| ||||| |||||| || ||||| ||||| | ||| || ||||| | | | Sbjct 20914161 AGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCACCCCCCCCCGTCAGCAGAGGTTGA 20914220 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||| || || ||| |||| ||||||||| | || || Sbjct 20914221 TCTTTGCTGGGAAATAGCTGGAAGATGGACGCACCCT 20914257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203383585375566