Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq15374 120 3e-22 seq1 118 1e-21 seq1558 107 2e-18 seq16296 93.3 4e-14 seq20873 84.2 2e-11 seq2224 84.2 2e-11 >seq15374 Length=4994092 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| ||||| || || |||||| Sbjct 172901 AGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGC 172842 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || ||||| ||||| | ||| | | ||| Sbjct 172841 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCC 172782 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || |||| | | |||||||| | ||||||||||| || Sbjct 172781 TTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTG 172722 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || ||||| ||||| || Sbjct 172721 ATGGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTT 172681 >seq1 Length=29265399 Score = 118 bits (130), Expect = 1e-21 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| || ||| ||||| ||||| ||||| || || |||||| | || || Sbjct 23783138 ACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 23783079 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||||||| || || || || ||||| ||||| | |||| | || ||||| ||| | Sbjct 23783078 ACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGATCCCT-TCCTTATCCTGG 23783020 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || |||| | | |||||||| | ||||||||||| || || || || Sbjct 23783019 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 23782960 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || || ||||| || Sbjct 23782959 CCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 >seq1558 Length=6673444 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || |||||| | || || Sbjct 2790685 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 2790626 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||| || || || || ||||| || || | ||| | || ||||| ||| | Sbjct 2790625 AGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGG 2790566 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | |||| ||| | ||||||||||| || || || || Sbjct 2790565 ATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 2790506 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || || ||||| || Sbjct 2790505 CCGGTCAGGGTCTTCACAAAGATTTGCATTTT 2790474 >seq16296 Length=2251693 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||| ||| ||| ||||||||||| || || || Sbjct 936307 GCCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAATCCGA 936366 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| | || || ||||| ||||| | |||||||| ||||| ||||| Sbjct 936367 AAGGGTGCGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACGCTGCTGGTC 936420 >seq20873 Length=9479699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| || || ||| | ||||| || || |||||| | || || Sbjct 8324315 ACCAGGTGCAGGGTCTACTCTTTGTGGATGCTGTAGTCAGAAAGAGTGCGCCCATCTTCC 8324374 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || || || | ||| ||||| | ||| | || || || ||| | Sbjct 8324375 AGCTGCTTGCCTGCAAAGATGAGCCACTGCTGGTCAGGGGGGGATGCCTTCTTTATCC-T 8324433 Query 41773 GATTTTTTG---CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || | || | ||||| | | || || || | ||||||||||| || || || Sbjct 8324434 GAATCTTGGCCCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 8324493 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| ||||| || || || ||||| || Sbjct 8324494 CTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 8324529 >seq2224 Length=17281721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| || || ||||| ||||| || || | | || | || || Sbjct 757884 ACCAGGTGCAGGGTTGACTCTTTTTGGATGTTGTAGTCAGAAAGAGCGTGCCCATCTTCC 757943 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGGAACGCTCTCCTTGTCCAT 41772 |||| ||| || || || || || ||||| ||||| | ||| | || ||||| ||| Sbjct 757944 AGCTACTTACCTGCAAAGATGAGCCGCTGCTGGTCAGGAGGGGTCCCT-TCCTTATCCTG 758002 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || |||| | | ||||| || | ||||||||||| | || || | Sbjct 758003 GATCTTGGCCTTCTCATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGCGATGGTCTC 758062 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| |||||||||||||| Sbjct 758063 GCCAGTCAGGGTCTTGACGAAAATCTGCAT 758092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462173751626800