Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10346 235 6e-57 seq1811 138 1e-27 seq985 102 8e-17 >seq10346 Length=345594 Score = 235 bits (260), Expect = 6e-57 Identities = 412/596 (69%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||||||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 269250 AGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGT 269309 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||||||| | || |||||| |||||||||||| | ||| ||||||| || Sbjct 269310 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 269369 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || | ||||||||| || || || | | ||||| | | | ||||| | || Sbjct 269370 AAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAG 269426 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | | |||| || || || | ||| | ||| | Sbjct 269427 GTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGC 269486 Query 17186 ATCGTTTCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTA 17242 |||||||| ||||| || | | || ||| |||| || | || || |||| || || Sbjct 269487 ATCGTTTCAATGGCATTGAGGAGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTG 269543 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || || || | || |||||||| || ||||||||||| ||||| || || || || | Sbjct 269544 TCAATAAGGAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAG 269603 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 || || |||||||| | || |||||||| | ||||| ||| | | ||||| || Sbjct 269604 AAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 269663 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || || || || || || ||| | ||| || |||| | | || | Sbjct 269664 ACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTG 269723 Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAA 17482 || | || ||||| | | || ||||| | ||||| || |||| |||||| Sbjct 269724 GGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAG 269783 Query 17483 AAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||| | ||||| |||||||| | ||| ||||||| ||| | ||||||| Sbjct 269784 AAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAA 269839 >seq1811 Length=1713758 Score = 138 bits (152), Expect = 1e-27 Identities = 374/568 (66%), Gaps = 11/568 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 78122 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 78063 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||||||||||| | ||| |||||| || || || ||||||| Sbjct 78062 TGAGTCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 78003 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 || | | | || || |||||||| | ||||| | | || ||||||||| Sbjct 78002 AGCAGGTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 77943 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||||| | | ||||| | || || | ||| | | | ||| ||||| |||| Sbjct 77942 TCCCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGG 77884 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | | | | || || || || || || || | Sbjct 77883 CATTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGATT 77828 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | || || || ||| |||| || || || | || || || || ||||| || ||| Sbjct 77827 ATTTATGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTC 77768 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||| ||| ||| ||||| | | ||||| | || || || || | Sbjct 77767 TGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACA 77708 Query 17377 CGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || ||| |||||| | | || |||||| |||| || || | || | Sbjct 77707 TGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCT 77650 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | |||||||| | || |||| ||| | || || Sbjct 77649 TCCCAGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCT 77590 Query 17495 GCCTTTTTATACATATTCCAAATATCAT 17522 | || |||||| | ||||||||||||| Sbjct 77589 ACTTTCTTATACGTTTTCCAAATATCAT 77562 >seq985 Length=6397689 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 2227123 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2227064 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 2227063 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2227004 Query 17106 C 17106 | Sbjct 2227003 C 2227003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516866114381760