Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10346 260 1e-64 seq1811 143 3e-29 seq17275 107 2e-18 seq985 102 8e-17 >seq10346 Length=345594 Score = 260 bits (288), Expect = 1e-64 Identities = 600/889 (67%), Gaps = 26/889 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||| || |||| | Sbjct 268975 ACTCCCATCCTCTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 269029 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| || || || ||||||| ||| | |||| Sbjct 269030 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTCAAACCCA 269087 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 269088 GTTCC--AGCATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 269144 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || ||| | || || | || | || | |||| ||||||||| ||| || Sbjct 269145 ATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 269204 Query 16139 TCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197 | |||| || || | ||| | | ||| ||| | || |||||||| ||||| Sbjct 269205 TTGATAATTATTTCTCTTACTCTCTACTCCAGT-GGTTTGTGTACCAGGTGTTTGAACAT 269263 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || || || || || || |||| || || |||||||| |||||||| |||||||| || Sbjct 269264 CAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGT 269323 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| |||||||||||| | ||||||||||| ||||| | || ||||| Sbjct 269324 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAA 269383 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 || | || || | | ||||| | | | ||||| | || ||||| ||||| | Sbjct 269384 GA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTC 269440 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | | |||| || || || | || | |||| ||||||||| ||||| Sbjct 269441 CCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 269500 Query 16438 CTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | | || ||| |||| | | || | |||| || || ||||| || ||||| Sbjct 269501 ATTGAGGAGAAATTCCCTTTCTTTGGGATCTT--TTATGTAAGTGTCAATAAGGAAACTA 269558 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| || ||||||||||||||||| || || || ||| |||| || || || || Sbjct 269559 TACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCT 269618 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||||| | |||||| ||| ||| ||| ||||| || || || |||||| Sbjct 269619 GTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 269678 Query 16616 GCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 || |||| ||||| || ||| | | || |||| | | || | | | || | Sbjct 269679 GCTGCAAAGAAAACCAGAACATGGGAT--ATAAAATCTCTCTCCTTGGGCTTCAGGGATT 269736 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| | | || ||||| | ||||| || || | ||||| ||| ||| | | Sbjct 269737 CCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCG 269796 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||| |||||||| | ||| ||||||| ||| | |||| || | ||| Sbjct 269797 CCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGAC 269845 >seq1811 Length=1713758 Score = 143 bits (158), Expect = 3e-29 Identities = 375/566 (66%), Gaps = 11/566 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||| |||||||| |||||||| || Sbjct 78120 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 78061 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | |||||||||| ||||| || || |||||| Sbjct 78060 AGTCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAG 78001 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 | | | || || ||||| || | ||||| | | ||| | ||||| || Sbjct 78000 CAGGTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTC 77941 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | | ||||| | || || | || | || | ||| ||||| ||||| Sbjct 77940 CCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCA 77882 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || ||| | |||| | |||| || || || ||||| || | | | | Sbjct 77881 TTGAAGAGAAATTCCC--TTTCTTTGTTATC--TTTAATGTGTGTCAATAAGGAGATTAT 77826 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 || || || ||| |||| ||||| || | || || ||||||||||| | || | Sbjct 77825 TTATGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTG 77766 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || | ||| |||| ||||| ||| ||| |||| || || || |||| || Sbjct 77765 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 77706 Query 16617 CAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | ||||| || ||| ||||| | | || |||||| |||| |||| | || | Sbjct 77705 CTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTC 77648 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | || ||||| | |||||||| | | | |||| || | || || | Sbjct 77647 CCAGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTAC 77588 Query 16735 CTTTTTATACATTTTCCAAATATCAT 16760 || |||||| ||||||||||||||| Sbjct 77587 TTTCTTATACGTTTTCCAAATATCAT 77562 >seq17275 Length=3305369 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 1143215 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1143156 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 1143155 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1143096 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 1143095 CCACCACTCTTTCC 1143082 >seq985 Length=6397689 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 2227121 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2227062 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 2227061 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 2227003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510742964034240