Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1020 549 1e-151 seq38050 477 7e-130 seq8220 459 2e-124 seq15621 417 6e-112 seq9267 343 1e-89 seq11265 206 2e-48 seq3440 201 8e-47 seq2198 138 8e-28 seq3748 118 8e-22 >seq1020 Length=1834505 Score = 549 bits (608), Expect = 1e-151 Identities = 462/566 (82%), Gaps = 1/566 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| | ||||||||||||||||||||||||||||||| | |||| Sbjct 1061919 AAAACACCTTCATATTAATCACTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTC 1061860 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || ||||| |||| ||| ||||||| ||| |||||| || |||||| |||||||| | | Sbjct 1061859 TCCTCTTGGACATCAGAGAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAA 1061800 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||| ||||||| |||||| ||||||||| ||||||||||| |||||||| ||| Sbjct 1061799 TCAATTTCTGAAAAAAAG-TGTCACTTTCAAAGTCCTGCATGATCCTTGTCACAAATAGT 1061741 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||||| || ||| | | |||| ||||| ||||| |||||||| || |||| |||||| Sbjct 1061740 TTAAGATGGCCTGGGTGATTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 1061681 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | | Sbjct 1061680 ATCATGTCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGTTTTAAGGCATCATCCAGA 1061621 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | | Sbjct 1061620 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 1061561 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | || ||||| || |||||||||||||| |||||||| |||| ||||| Sbjct 1061560 TTAATTCTATCCTTGAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCC 1061501 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| | |||||||||| || ||| ||||| | || |||||||| ||||||| Sbjct 1061500 ATAATCACCAGATTCTGTTTACCTTCTACTGAAGAAGGTGTGGTCATTCTCTGGAAATAC 1061441 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || |||||| | || ||||| |||| || || | |||||||||||||||||| Sbjct 1061440 CTGAATTCATTCCTGAGCGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTT 1061381 Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520 || | ||||| || ||||||||||| Sbjct 1061380 TGGGACACAGCGACGATGCAGTTTAG 1061355 >seq38050 Length=490 Score = 477 bits (528), Expect = 7e-130 Identities = 400/489 (82%), Gaps = 1/489 (0%) Strand=Plus/Minus Query 4033 AGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAG 4092 ||||||| || |||||| | |||||| |||||||| | ||||| |||||||| |||| Sbjct 489 AGAACACCTGTGTATTCTGGTAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAGAAAG 430 Query 4093 GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAA 4152 ||||||| ||||||||||||||||||||| |||||||| |||||||||| || ||| | | Sbjct 429 GTGTCACTTTCAAAGTCTTGCATGATCCTTGTCACAAATAGTTTAAGATGGCCTGGGTGA 370 Query 4153 CTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTT 4212 |||| ||||| ||||| |||||||| || |||| |||||| | |||||||||||||||| Sbjct 369 TTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAAATCATGTCTACTTTATTT 310 Query 4213 GCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGA 4272 ||||||||||| ||||| ||||||||||| |||||||| | ||| | || | ||||||| Sbjct 309 GCTAATTCTGGTTGTTCAGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGA 250 Query 4273 GCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAA 4332 |||| |||||| | ||||| ||||| |||||||||| | ||||||||| || |||||| Sbjct 249 GCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAA 190 Query 4333 GGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTAC-CCATAATCACTAAATTCTG 4391 || || |||||||||| ||| |||||||||||||| |||| |||||||||| | |||||| Sbjct 189 GGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCCATAATCACCAGATTCTG 130 Query 4392 TTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAG 4451 |||| || ||| ||||| || || |||||||| ||||||| | | || |||||| | || Sbjct 129 TTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAATATCTGAATTCATTCCTGAG 70 Query 4452 TCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAAT 4511 ||||| |||| || || | ||||| ||||||||||| || | ||||| || || Sbjct 69 CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCGACGAT 10 Query 4512 GCAGTTTAG 4520 ||||||||| Sbjct 9 GCAGTTTAG 1 >seq8220 Length=248012 Score = 459 bits (508), Expect = 2e-124 Identities = 443/566 (78%), Gaps = 2/566 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 132393 AAAACACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTGAACTTAACGTCTTTC 132452 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| ||||||| ||| |||||| || |||||| ||||| || | | Sbjct 132453 TGCTCCTGGACATCAGAGAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTTTCCAAA 132512 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||| ||| Sbjct 132513 TCAATTTCTGGAAAAACTGTGTCACTTTCAAAGTCCCGCATGATCCTTGTCACAAATAGT 132572 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||||| | ||| | | |||| ||||| ||||| |||||||| || |||| |||||| Sbjct 132573 TTAAGATGGTTTGGGTGATTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 132632 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| | | Sbjct 132633 ATCATCTCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGTTTTAAGATATCATCCAGA 132692 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | | ||||||||| |||||| | ||||| ||||| |||||||||| | | Sbjct 132693 CTTCTGGCAAGAGAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 132752 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | |||||||| || |||||||||||||| ||||||| |||| ||| | Sbjct 132753 TTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCGGATCTTCCTACAC 132812 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 ||| || | |||||||||| || || ||||| || |||||||| ||||||| Sbjct 132813 GTAA-CAGCAGATTCTGTTTACCTTCTAGTGAAGA-GTCTGTGTCATTCTCTGGAAATAC 132870 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || |||||| | || ||||| |||| || || | |||| |||||||||||| Sbjct 132871 CTGAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCTAATGCCCATGTTC 132930 Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520 || | ||||| || ||||||||||| Sbjct 132931 TGGGACACAGCGACGATGCAGTTTAG 132956 Score = 453 bits (502), Expect = 8e-123 Identities = 449/578 (78%), Gaps = 2/578 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| |||||||||||||| |||||||||| ||||||| |||| Sbjct 12532 AAAACACGTTCATATTAATCATTCTTCTCATATAATTCAAATTTGAACTTAATGTCTTTC 12591 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||| ||||||| ||| |||||| || |||||| ||||| || | | Sbjct 12592 TCCTCCTGGACATCAGAGAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTTTCCACA 12651 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| | |||| ||||||||| |||||||||| |||||||| ||| Sbjct 12652 TCAATTTCTGGAAAAAACGCATCACTTTCAAAGTCCCGCATGATCCTTGTCACAAATAGT 12711 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 | ||||| || ||| | | |||| ||||| ||||| |||||||| || |||| |||||| Sbjct 12712 TGAAGATGGCCTGGGTGATTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 12771 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||| | | Sbjct 12772 ATCATCTCTACTTTATTGGCTAATTCTGGTTGTTCAGTAAGTTTTAAGATATCATCCAGA 12831 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | | Sbjct 12832 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 12891 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | ||||||| || |||||||||||||| ||||||| |||| ||| | Sbjct 12892 TTAATTCTATCCTTTAAAGATCGATTCTTCTCAGGAATGGAGAACCGGATCTTCCTACAC 12951 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 ||| ||| | ||||||||| || || |||| | || |||||||| |||||| Sbjct 12952 GTAA-CACCAGGTTCTGTTTACCTTCTAGTAAAGAGTTTGT-GTCATTCTCCGGAAATAC 13009 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 |||| |||||| | || ||||| |||| | || | |||||||||||| |||| Sbjct 13010 CTAAATTCATTCCTGAGCGGCGGCCAGGGCAGCTCCCCGTTCTTGCCAATGCCCGTGTTC 13069 Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | ||||| || ||||||||||| |||||||| Sbjct 13070 TGGGACACAGCGACGATGCAGTTTAGCAAATGAACCAT 13107 Score = 437 bits (484), Expect = 6e-118 Identities = 440/568 (77%), Gaps = 4/568 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 56714 AAAATACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTGAGCTTAATGTCTTTC 56773 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||| | ||||| ||| |||||| || |||||| |||||||| | | Sbjct 56774 TCCTCCTGGACATCAGAGAAAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAA 56833 Query 4075 TCAAATTCTGG--AAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACA 4132 |||| |||||| |||||| |||||| ||||||||| ||||||||| |||||||| | Sbjct 56834 TCAATTTCTGGGGAAAAAAAGTGTCATTTTCAAAGTCCCACATGATCCTTGTCACAAATA 56893 Query 4133 GTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCC 4192 ||||||||| | ||| | | |||| ||||| |||| ||| |||| || |||| ||||| Sbjct 56894 GTTTAAGATGGTTTGGGTGATTCATGGCTTCCTTATGAACAAAACTGCCACCAACTATCC 56953 Query 4193 AGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTA 4252 | | ||| | || |||||||||||||||||| ||||| ||||||||||| |||||| | Sbjct 56954 AAATCATCTATATTTTATTTGCTAATTCTGGTTGTTCAGTAAGTTTTAAGATATCATCCA 57013 Query 4253 AACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAA 4312 ||| | || | | ||||| ||| |||||| | |||| ||||| |||||| ||| | Sbjct 57014 GACTTCTGGCAAGAGAATGATCTCCTTGTGGAGGTCCCTTGAGTTCTCTGCTGATAACTA 57073 Query 4313 CATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTAC 4372 ||||||||| | |||||||| || || ||||||||||| |||||||| |||| ||| Sbjct 57074 AATTAATTCTATCCTTTAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGATCTTCCTAC 57133 Query 4373 CCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432 ||||| ||| | |||||||||| || || ||||| | || |||||||| |||||| Sbjct 57134 ACATAA-CACCAGATTCTGTTTACCTTCTAGTGAAGAGTTTGT-GTCATTCTCCGGAAAT 57191 Query 4433 GTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGT 4492 |||| |||||| ||||| ||||| |||| || || | |||||| ||| ||||| Sbjct 57192 ACCTAAATTCATTCCTAAGTGGCGGCCAGGGCAGGTGCCCGTTCTTGCCACTGCACATGT 57251 Query 4493 TTTGAGCTACAGCAACAATGCAGTTTAG 4520 | || | ||||| || ||||||||||| Sbjct 57252 TCTGGGGCACAGCGACGATGCAGTTTAG 57279 >seq15621 Length=1628728 Score = 417 bits (462), Expect = 6e-112 Identities = 439/574 (76%), Gaps = 14/574 (2%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||| ||||||||||||||||||||| |||| Sbjct 563320 AAAACACCTTCATATTAATCATTCTTCTCATGTACTTCAAATTTGTACTTAATGTCTTTC 563261 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| || | ||||| | |||||| || |||||| |||||||| | | Sbjct 563260 TCCTCCTGGACATCAGGGAAAACACCTCAGTATTCTGGCAGAAGTTTATATTTCTCCAAA 563201 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| ||||||| ||||||||| || |||||||| |||||||| ||| Sbjct 563200 TCAATTTCTGGAAAAAATGTGTCACTTTCAAAGTCCTGAATGATCCTTGTCACAAATAGT 563141 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTAT-ACACAGAACTACCTCCAATTATCCA 4193 ||||||| || ||| | | |||| | ||| |||| | ||| ||| ||| |||| | ||| Sbjct 563140 TTAAGATTGCTTGGGTGATTCATGGATTCCTTATAAAACAAAACCACCACCAACCACCCA 563081 Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAA 4253 | ||||||||||| ||||||||||||||| | | ||||||| || |||||||| | Sbjct 563080 AATCATGTCTACTTCATTTGCTAATTCTGGTTAT----TAAGTTTCAAGGCATCATCCAG 563025 Query 4254 ACTCTTAGC-------TAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGA 4306 ||| | || |||||| ||| || | ||| || | |||||| || |||||| Sbjct 563024 ACTTCTGGCAAAAAAAAAAAAAAAGAGTTCCTTCTGG-AGGTTCTTTAGGTCTCTGCTGA 562966 Query 4307 GAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCT 4366 |||| | |||||||||| |||||||| || || |||||||||| |||||||| ||| Sbjct 562965 GAACTAAATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAGAACCAGATCT 562906 Query 4367 TTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTT 4426 | ||||||||||||| | |||||||||| || | | ||||| || || |||||||| | Sbjct 562905 TCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGTGGTCATTCTCT 562846 Query 4427 GGAAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGC 4486 |||||| | || |||||| | || |||| | ||| || | ||| ||||| |||| Sbjct 562845 GGAAATACCTGAACTCATTCCTGAGCGGTGGCTAGGGC-AGGTCCCTGTTTTGCTGATGC 562787 Query 4487 CCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 | ||||| || | ||||| || ||||||||||| Sbjct 562786 CAATGTTCTGGGACACAGCGACGATGCAGTTTAG 562753 >seq9267 Length=785363 Score = 343 bits (380), Expect = 1e-89 Identities = 429/584 (73%), Gaps = 12/584 (2%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || ||| ||||||| |||||| |||||||||||||||||||||||||| | |||| Sbjct 551567 AAAACACTTTTATATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 551508 Query 4015 TCTTCTTGCACATTAGAAAGAACACTT---GGATATTCTATCAAAAGTTTGTATTTCTCT 4071 || || | ||||| ||| | ||||| | || |||||| | |||| | ||||| ||| Sbjct 551507 TCCTCCTTCACATCAGAGACAACACCTTGTGGGTATTCTGG-AGAAGTGTATATTTGTCT 551449 Query 4072 AGATCAAATTCTGG---AAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACA 4128 | ||| |||||| |||||| ||||||| ||||| |||||||||||||| |||| Sbjct 551448 AAATCGTCTTCTGGGGGAAAAAAAGTGTCACTTTCAAGGTCTTGCATGATCCATACCACA 551389 Query 4129 AACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATT 4188 || ||||||| || | | ||| |||| | ||| ||||| |||||||| |||| | | Sbjct 551388 AATAGTTTAAAATGGTCTCT-TAATTCATGGATTCCTTATAAACAGAACTGACTCCCACT 551330 Query 4189 ATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCA 4248 | | |||||||||| |||||| ||||||||| | || || || | ||||| |||| | Sbjct 551329 GTAAAAACCATGTCTAGTTTATTCGCTAATTCTAGTTGCTCAATATGCTTTAAGGCATTA 551270 Query 4249 TCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGA 4308 | ||| | || |||| ||||||| ||||| | ||||| ||| | |||| | Sbjct 551269 CTCAGACTTTAGGCAGGAAAAGGAGCTCTTTGTGGTGGTTCCTTGGATTCTCTACTGACA 551210 Query 4309 ACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTT 4368 || | ||||||| | || ||||| | |||||||||| ||| |||||||| ||||| Sbjct 551209 ACTAAATTAATTATATACTTCAAAGGTTGATTCTTCTCAGTAATCGAGAACCAGGTCTTC 551150 Query 4369 TTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGG 4428 ||| || || |||| |||||||||| || ||| ||||| | || |||||||||||| Sbjct 551149 CTACTCAAAAATACTAGATTCTGTTTACCTTCTACTGAAGAGGGTGTGGTCATTCTTTGG 551090 Query 4429 AAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCC 4488 || || || | ||| | || || || |||| || || | || |||||||| Sbjct 551089 AA----TTGAATTTATTTCTGAGCTGGGGTCAGGGCAGGTCCCCATTCCTGACAATGCCC 551034 Query 4489 ATGTTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || || | ||||| |||||||||||||| | |||||||| Sbjct 551033 ATCTTCTGGGAAACAGCGACAATGCAGTTTAGCGGATGAACCAT 550990 >seq11265 Length=3119854 Score = 206 bits (228), Expect = 2e-48 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| |||| |||||| ||| |||||||| || || || |||||||| || | ||| || Sbjct 710310 AGCTCTTAGGCTACATGGTGGACAATGGGGGTGACACAGGTGCAGCCCACGGACACCAGT 710369 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || || |||||| | || | | ||||| || || ||| Sbjct 710370 ATCTTCTCCAGCCGGAAGGAGTTGGGGCAGTGCCGAGGATCCCGGCGCAGGACCAGGATC 710429 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| || || || Sbjct 710430 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAGTCCACGTTCCCATCAGCGTTGACGCAG 710489 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| |||||||| ||||| ||||||||||||||||| || | || |||||| Sbjct 710490 CCCAAGTGGCGGCACTTTGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 710549 Query 27171 CG 27172 || Sbjct 710550 CG 710551 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTT-AGA-----A 27227 |||||| ||||||| || || |||| |||||||| ||||| | |||||| ||| | Sbjct 711795 TGGAGATTCCAAGGTGAGGTGGATCGGTTGTAGTAATCTGAGGACCTTTTGAGATTGGTA 711854 Query 27228 CTAGTATTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTA 27287 | ||||||| ||| ||||| ||| | |||||||||| ||| || ||| | |||| Sbjct 711855 TTGGTATTCCGGTTGTGGATGTTCAGGTTGACCATCACAGTCCGGGGGAAGTTCTTGTCC 711914 Query 27288 GCAGC---TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCT 27344 ||| | |||| ||| || ||| | ||| |||| ||| ||| ||||| || Sbjct 711915 TCAGAATTTGGGCATTCTGGATTTCGTGGGATTGCTATTCCTGCCTTCACTATGGCCTCC 711974 Query 27345 ATGCTCAGCAGCAGAAG 27361 | |||||||||||| || Sbjct 711975 AGGCTCAGCAGCAGCAG 711991 >seq3440 Length=2799305 Score = 201 bits (222), Expect = 8e-47 Identities = 242/307 (79%), Gaps = 18/307 (6%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAA-TTTGTACTTAATACTTTT 4013 |||| || || ||||||| ||||||||||||||||||||| ||||||||| || | ||| Sbjct 964203 AAAACACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTTGTACTT-ATGCCTTT 964261 Query 4014 CT-CTTCTTGCACA--TTAGAAAGAACA-CTTGGATATTCT-ATCAAAAGTTTG-TATT- 4066 || | ||||| ||| | ||| |||||| || || |||| | | ||| ||| |||| Sbjct 964262 CTCCCTCTTGGACAACTCAGAGAGAACACCTGGGGTATTTTGGGTAGAAGCTTGCTATTC 964321 Query 4067 TCTCTAGATCAAATTCTGGAA-AAAAGGTGTCACATTCAAAGTCTTGCAT-GATCCTAGT 4124 |||| | ||||| |||||||| ||||||||||| ||||||||||||| | |||||| || Sbjct 964322 TCTCCAAATCAATTTCTGGAAGCAAAGGTGTCACTTTCAAAGTCTTGCGTGGATCCTTGT 964381 Query 4125 CACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCC 4184 ||| || |||||||||| || ||| | | |||| | ||| ||||| ||||||| || || Sbjct 964382 CAC-AATAGTTTAAGATGGCCTGGGTGATTCAT-GGTTCCTTATA-ACAGAAC-GCCACC 964437 Query 4185 AATTATCCAGACCATGT-CTACTTTATTTGCTAATTC-TGGCTGTT-CGGTAAGTTTTAA 4241 || |||||| | ||||| |||||| || ||||||| ||| |||| | |||||||||| Sbjct 964438 AACTATCCAAATCATGTCCTACTTGTTTGACTAATTCTTGGTTGTTCCCATAAGTTTTAA 964497 Query 4242 AGCATCA 4248 |||||| Sbjct 964498 GGCATCA 964504 Score = 179 bits (198), Expect = 3e-40 Identities = 138/164 (84%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 4266 AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCC 4325 ||||||||||| |||||| | ||||| ||||| |||||||||| | ||||||||| || Sbjct 964699 AAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACC 964640 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 |||||||| || |||||||||||||| |||||||||||||| |||| ||||||||| | Sbjct 964639 CTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAG 964580 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGA 4429 |||||||||| || ||| ||||| || || |||||||| |||| Sbjct 964579 ATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGA 964536 >seq2198 Length=3459117 Score = 138 bits (152), Expect = 8e-28 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| || |||| |||||| | ||||||||||||||||||||||||||| Sbjct 2042399 TTATAAACAGAACTGCCACCAACTATCCAAATCATGTCTACTTTATTTGCTAATTCTGGT 2042458 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 ||||| ||||||||||| |||||||| | ||| | || | ||||||||||| |||||| Sbjct 2042459 TGTTCAGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGA 2042518 Query 4285 AGCTCC 4290 | ||| Sbjct 2042519 GGTTCC 2042524 Score = 134 bits (148), Expect = 1e-26 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||||||||| | ||||||||| |||| |||||| || ||||||||||| Sbjct 2053887 CTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCTTGTAAAGGTCGATTCTTCTCAGG 2053946 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||||||||| |||||||||||||| | |||||||||| || Sbjct 2053947 AATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2053995 Score = 129 bits (142), Expect = 4e-25 Identities = 111/136 (82%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||| ||||||||||| |||||| |||||||| Sbjct 2038030 AAGTTTATATTTCTCCAAATCAATTTCTGGAAGAAAGGTGTCACTTTCAAAATCTTGCAT 2038089 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| |||||||||| || ||| | | |||| ||||| || | | | | Sbjct 2038090 GATCCTTGTCACAAATAGTTTAAGATGGCCTGGGTGATTCATGGCTTCCTTTGAAATAAA 2038149 Query 4176 ACTACCTCCAATTATC 4191 || || | ||||| || Sbjct 2038150 ACAACAT-CAATTTTC 2038164 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 2033156 AAAACACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTC 2033215 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || ||||| |||| ||| ||||||| ||| ||| Sbjct 2033216 TCCTCTTGGACATCAGATAGAACACCTGGGTAT 2033248 >seq3748 Length=9089757 Score = 118 bits (130), Expect = 8e-22 Identities = 261/370 (71%), Gaps = 45/370 (12%) Strand=Plus/Minus Query 4064 ATTTCTCT-AGATCAAATTCTGGAA-AAAAG-GTGTC-ACATTCAAA-GTCTTGCAT-GA 4117 ||||||| | ||||| |||||||| ||||| ||||| || |||||| ||||||||| || Sbjct 8432859 ATTTCTCCCAAATCAATTTCTGGAAGAAAAGCGTGTCCACTTTCAAAAGTCTTGCATTGA 8432800 Query 4118 TCCTAG-TCACAAAC-AGTTTAAGATCGCATGGATAACTCATAGC--TTCTTTATACACA 4173 |||| | ||||||| |||||||||| || ||| | | ||| | ||| ||||| ||| Sbjct 8432799 TCCTTGGTCACAAAATAGTTTAAGATGGCCTGGGTGATACATGGGCTTTCCTTATAAACA 8432740 Query 4174 G-AACTACCTCCAATTATCCAGA---CCATGTCTACTTTA---TTTGCTAATTCTGGCT- 4225 | |||| || | || || ||| | ||||||||||||| |||||||||||||| | Sbjct 8432739 GGAACTGCCACAAACTACCCAAAATTCCATGTCTACTTTTAATTTTGCTAATTCTGGGTT 8432680 Query 4226 --GTTCGGTAAGTTTTAAAG--CATCATCTAA--ACTCT-TAGC-----TAAAAAATGAG 4273 ||| ||| |||| || |||||| || ||| | | || ||||| |||| Sbjct 8432679 TGTTTCAGTAGTTTTTTTAGGCAATCATCCAAGGACTTTCTGGCCCAAGGAAAAATTGAG 8432620 Query 4274 CTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAG-----AACAACATT---AATT--CTG 4323 ||| ||||| || | | || | | ||||||| || || ||| |||| | Sbjct 8432619 CTCCTTGTGGGAGGTTCCTTGGATTTCTGCTGAGAAACTAAAAAAATTGTAAATTTCTTA 8432560 Query 4324 CCTTTTAAAG----GCCGGTTCTTCTCAGGAATTGAGAACC-AAGTCTTTTTACCCATAA 4378 | ||||||| || |||||||||| || || |||| ||||||| ||| |||||| Sbjct 8432559 CGCTTTAAAGGGTCGCACTTTCTTCTCAGAAAGAGAAAACCAAAGTCTTCTTATCCATAA 8432500 Query 4379 TCACTAAATT 4388 |||| |||| Sbjct 8432499 TCACAGAATT 8432490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360788770467032