Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq14137 235 6e-57 seq4455 174 2e-38 seq2874 159 4e-34 seq64438 114 2e-20 >seq14137 Length=3212571 Score = 235 bits (260), Expect = 6e-57 Identities = 603/910 (66%), Gaps = 11/910 (1%) Strand=Plus/Minus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 176403 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 2142991 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2142933 Query 176404 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 176463 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 2142932 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2142873 Query 176464 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 176523 | | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 2142872 TACTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2142813 Query 176524 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 176583 || | | | | ||| | ||| || || | | ||||||| || ||| ||| Sbjct 2142812 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2142756 Query 176584 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 176643 | | ||||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 2142755 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2142696 Query 176644 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701 | || || ||||| ||||||| ||| || ||| | || || |||| ||| || Sbjct 2142695 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2142638 Query 176702 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761 | ||| | | |||||| ||||||| | || | || ||||||||| | || Sbjct 2142637 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTGGCAGCTCTTCCTGAATTTATTTT 2142578 Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820 ||||| |||| | | ||||| || || | || |||||| || Sbjct 2142577 CCATGGGACTGAAGA-GTTGCTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2142519 Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880 | | || ||||||| |||| | || ||| | || ||||| | | Sbjct 2142518 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCACTCC 2142459 Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940 |||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 2142458 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2142399 Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 2142398 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2142339 Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 177060 | |||||||||||||| | | | |||| | ||||||| ||| | | | | || | Sbjct 2142338 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2142279 Query 177061 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 177120 | | |||| | ||||| | ||||| ||| ||||| | || | |||| Sbjct 2142278 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTCGTGCTGGTGACGGAGGTGACTGCCT 2142219 Query 177121 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 177180 || | ||||| ||| | ||||||||||||||||| || | || |||| || | | Sbjct 2142218 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGCTGGAGAGAGATTCCGCAAGT 2142159 Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240 ||||| ||||||||||||||| ||||| ||| |||| || |||||||| |||| Sbjct 2142158 ACCTGCACCACTTCTTCCACAGGCACGTGCTCATGCACCTGGCCAGATACATCCCATTCC 2142099 Query 177241 TGTCTGGTGA 177250 | || |||| Sbjct 2142098 TTCCTAGTGA 2142089 Score = 235 bits (260), Expect = 6e-57 Identities = 603/910 (66%), Gaps = 11/910 (1%) Strand=Plus/Minus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 9517 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 2142991 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2142933 Query 9518 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 9577 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 2142932 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2142873 Query 9578 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 9637 | | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 2142872 TACTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2142813 Query 9638 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 9697 || | | | | ||| | ||| || || | | ||||||| || ||| ||| Sbjct 2142812 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2142756 Query 9698 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 9757 | | ||||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 2142755 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2142696 Query 9758 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815 | || || ||||| ||||||| ||| || ||| | || || |||| ||| || Sbjct 2142695 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2142638 Query 9816 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875 | ||| | | |||||| ||||||| | || | || ||||||||| | || Sbjct 2142637 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTGGCAGCTCTTCCTGAATTTATTTT 2142578 Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934 ||||| |||| | | ||||| || || | || |||||| || Sbjct 2142577 CCATGGGACTGAAGA-GTTGCTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2142519 Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994 | | || ||||||| |||| | || ||| | || ||||| | | Sbjct 2142518 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCACTCC 2142459 Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054 |||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 2142458 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2142399 Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 2142398 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2142339 Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 10174 | |||||||||||||| | | | |||| | ||||||| ||| | | | | || | Sbjct 2142338 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2142279 Query 10175 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 10234 | | |||| | ||||| | ||||| ||| ||||| | || | |||| Sbjct 2142278 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTCGTGCTGGTGACGGAGGTGACTGCCT 2142219 Query 10235 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 10294 || | ||||| ||| | ||||||||||||||||| || | || |||| || | | Sbjct 2142218 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGCTGGAGAGAGATTCCGCAAGT 2142159 Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354 ||||| ||||||||||||||| ||||| ||| |||| || |||||||| |||| Sbjct 2142158 ACCTGCACCACTTCTTCCACAGGCACGTGCTCATGCACCTGGCCAGATACATCCCATTCC 2142099 Query 10355 TGTCTGGTGA 10364 | || |||| Sbjct 2142098 TTCCTAGTGA 2142089 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 2202070 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2202129 Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATA--TTGGAATGTATCATGATTGG 9660 ||| || || || || |||| || | ||| |||| | ||| ||| || || ||| Sbjct 2202130 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTG--ATGGAT---GACTGG 2202184 Query 9661 ACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGC 9720 | || ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 2202185 ATCTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGC 2202244 Query 9721 CAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTA 9780 || |||||| |||||||||||| || | || ||||| || || | ||| |||| || Sbjct 2202245 GAGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTG 2202304 Query 9781 ACTGCTTTGAGG 9792 ||| |||||| Sbjct 2202305 TTTGCCTTGAGG 2202316 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 2202070 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2202129 Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATA--TTGGAATGTATCATGATTGG 176546 ||| || || || || |||| || | ||| |||| | ||| ||| || || ||| Sbjct 2202130 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTG--ATGGAT---GACTGG 2202184 Query 176547 ACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGC 176606 | || ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 2202185 ATCTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGC 2202244 Query 176607 CAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTA 176666 || |||||| |||||||||||| || | || ||||| || || | ||| |||| || Sbjct 2202245 GAGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTG 2202304 Query 176667 ACTGCTTTGAGG 176678 ||| |||||| Sbjct 2202305 TTTGCCTTGAGG 2202316 >seq4455 Length=3877446 Score = 174 bits (192), Expect = 2e-38 Identities = 133/157 (85%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || || || ||||||||||||||||| | ||| Sbjct 785917 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 785858 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 785857 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 785801 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 785800 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 785764 Score = 123 bits (136), Expect = 3e-23 Identities = 85/96 (89%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 ||||||||| |||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 788239 CTCAGTTTTGCATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 788180 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 788179 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 788144 >seq2874 Length=3733233 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 1920571 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1920512 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 1920511 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1920452 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 1920451 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 1920411 >seq64438 Length=1527 Score = 114 bits (126), Expect = 2e-20 Identities = 213/305 (70%), Gaps = 17/305 (6%) Strand=Plus/Plus Query 145582 TCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTA-TGTCCTCCACCCGCCTCAGGATCCT 145640 |||| | |||||| ||||| |||| ||||| |||| || || | ||||| || Sbjct 833 TCCACCTGAAAGTCTTCCGCT-TGAAATCATCACGTGTC-TCAACTTTCTGAAGGATTCT 890 Query 145641 GAGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGG 145698 |||| | |||||||| | || ||| ||| ||||| | ||||| | | | ||| Sbjct 891 GAGCTTTGGGAAAGGTCTTGGTTCTCTCTGA--AGCTGAATTTTCAGTTTCGCAATGTGA 948 Query 145699 TTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTG 145758 | ||||| || | ||| || |||| || | ||||| ||||||| ||| ||||| Sbjct 949 CTTAGGTAAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTG 1008 Query 145759 AGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG-GCACCCCCAG 145817 | ||| |||| || || || ||||||| ||||||||| |||||||||| |||||| Sbjct 1009 ATGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCCA--- 1065 Query 145818 CCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAA 145877 | |||| || | |||| |||||||||||| ||||| || | ||||| |||| Sbjct 1066 ------GGCCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAA 1119 Query 145878 CTGGC 145882 ||||| Sbjct 1120 CTGGC 1124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589302088169280