Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2789 489 2e-133 seq1599 320 2e-82 seq4070 129 7e-25 >seq2789 Length=2053062 Score = 489 bits (542), Expect = 2e-133 Identities = 464/589 (79%), Gaps = 4/589 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 1331339 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 1331398 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| ||||||| |||||||||||||||||||| || ||||||||| Sbjct 1331399 ACGGGCACACCGTCAGGGCCCACCAGGAACTTCTCGAAGTTCCAGGTAACATCGTTGCGG 1331458 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGT-GCT-CATGTCGTCGC 83234 ||||| ||||||||| |||| || ||||||| ||| ||||| || ||| |||||| Sbjct 1331459 CACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGCGGCAT--CGTCGC 1331516 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | || || ||||||||||| || |||||||||||||| || || ||| ||||||| | Sbjct 1331517 TGGGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCACCCCCACACCGTTCA 1331576 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||| ||||||||||||||||| || || |||| ||| || ||||| ||||||| || Sbjct 1331577 CCTCCCACTTCTCGAAGAGCATGAAATTGGGCTTGAACCCACCACCAGGTCGGACGTACT 1331636 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACG 83414 | |||||| || ||||| | |||| || ||| ||||| || || |||||||| |||| Sbjct 1331637 TGAGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCTGATGCCCAAACTGGTTGCACG 1331696 Query 83415 GGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAG 83474 |||| || ||||| ||||| ||||| | || ||||||| |||||||||||||||||| | Sbjct 1331697 GGAAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGCGCCACTGCAGCTCGTTCATCTGGG 1331756 Query 83475 TGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGC 83534 |||| ||||||||| || | |||||||||||||| || ||||| || || | ||| || Sbjct 1331757 TGTAGTCCCGGACCATGGTGCCTCAGAGGGACGCCACATTCTCCATAAGTAGCACCTTGC 1331816 Query 83535 CCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGT 83594 |||| | |||| | ||||||||| || || |||| | |||||| || |||||||||| Sbjct 1331817 CCCGCAGTGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGCGCCGAGAAGGCGT 1331876 Query 83595 ACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 |||| || || | ||||||| || ||| | || || || |||| || Sbjct 1331877 ACACTGACTGGGCCCCTGCCGCCGCTAGCCGAGCAGCACACATGGCGCA 1331925 >seq1599 Length=2728846 Score = 320 bits (354), Expect = 2e-82 Identities = 273/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 1588125 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 1588066 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| |||||||||||||| |||||||||||||| || ||||||||| Sbjct 1588065 ACGGGCACACCGTCAGGGCCCACCAAGAACTTTTCGAAGTTCCAGGCAACATCGTTGCGG 1588006 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| |||||| | |||||||| Sbjct 1588005 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGTAGTGGCATCGTCGCTG 1587946 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || |||||||||||||| || || |||| ||||||| ||| Sbjct 1587945 GGGACTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCCCACCGTTCACC 1587886 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 1587885 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 1587826 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| || ||| |||| Sbjct 1587825 AGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCT 1587789 Score = 214 bits (236), Expect = 2e-50 Identities = 187/233 (80%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 1587541 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGC 1587482 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 1587481 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 1587422 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | |||||||| || || |||| Sbjct 1587421 CATTCTCGATAAGTAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGACTCCCCGCCGG 1587362 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGC 83623 | |||||| || |||||||||||||| || || | ||||||| || ||| Sbjct 1587361 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGCCGCTGCCGCCGCTAGC 1587309 >seq4070 Length=2858617 Score = 129 bits (142), Expect = 7e-25 Identities = 208/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 2743818 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 2743760 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 2743759 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 2743700 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || ||| ||| | | |||| ||||| Sbjct 2743699 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCGTCCCGCATCAAGCTCATCCGCCACTAC 2743641 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 2743640 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 2743585 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 2743584 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 2743536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607997510681280