Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10591 138 1e-27 seq465 138 1e-27 seq782 120 3e-22 seq21443 111 1e-19 seq621 111 1e-19 seq1776 100 2e-16 seq23525 96.9 3e-15 seq2511 86.0 5e-12 seq14565 84.2 2e-11 seq12761 84.2 2e-11 seq11136 82.4 7e-11 >seq10591 Length=527945 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || |||||||| || |||||||| || | |||||| ||| Sbjct 132109 CAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 132168 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || | || ||||||||||| || || || || ||||||||||| Sbjct 132169 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 132228 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| || ||||||||| | ||| | || Sbjct 132229 TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 132288 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || | || |||||||| ||||||||| Sbjct 132289 TTTGCCCGTGTGGGTCTTTACAAAGATCTGCATG 132322 >seq465 Length=2116526 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || |||||||| || |||||||| || | |||||| ||| Sbjct 2111681 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 2111622 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || | || ||||||||||| || || || || ||||||||||| Sbjct 2111621 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 2111562 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| || ||||||||| | ||| | || Sbjct 2111561 TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 2111502 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || || ||||| ||||||||| Sbjct 2111501 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 2111468 >seq782 Length=6300357 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || |||||||| || || ||||| ||| || Sbjct 3450633 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 3450574 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| | | |||||| || ||||| ||||| |||||||| Sbjct 3450573 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 3450514 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | |||||| || ||||||||||| ||| | || ||| Sbjct 3450513 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 3450454 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 3450453 CCAGTCAGGGTCTTCACGAAGATCTGCAT 3450425 >seq21443 Length=656158 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | |||||| ||| || Sbjct 30113 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 30172 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| ||||| || ||||| ||||| || Sbjct 30173 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 30232 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 30233 ATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 30292 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 30293 CCGGTCAGGGTCTTCACGAAGATCTGCAT 30321 >seq621 Length=1137327 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| || || |||| |||||| |||||||| || | |||| | |||||| Sbjct 429901 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCC 429960 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || ||||||||||| || || || || |||||||||||| | Sbjct 429961 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 430020 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| | | || ||||| || ||||||||| | ||| | || ||| Sbjct 430021 ATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTG 430080 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| | |||||| Sbjct 430081 CCCGTGAGGGTCTTCACAAAGAGCTGCAT 430109 >seq1776 Length=1009680 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 76309 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 76250 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | |||||||| ||||| Sbjct 76249 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 76190 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || || Sbjct 76189 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 76130 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 76129 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 76082 >seq23525 Length=221919 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 219780 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 219839 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | |||||||| ||||| Sbjct 219840 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 219899 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || || | | || || Sbjct 219900 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAAC 219959 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 219960 CTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 220007 >seq2511 Length=2685710 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || |||||||| | | |||||| ||| Sbjct 488316 CAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATC 488375 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCC-TCCTTGT 118644 ||| |||||||| |||| || ||||||||||| | || || || ||| ||||||| Sbjct 488376 CTCCAGCTGTTTCCCAGAAAGTATCAGACGCTGCTGGTTAGGTGGGATACCCTTCCTTGT 488435 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCG 118704 || |||||| ||| || | | | ||||| || ||||| ||| | ||| | | Sbjct 488436 CTTGAATTTTGGCTTTGACATTCTAAATAGTGTCACTGGGCTCGATCTCAAGGGTGATGG 488495 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||| | | || || || ||||| |||||||| Sbjct 488496 TCTTGTCCATGAGGGTCTTCACAAAGATCTGCAT 488529 >seq14565 Length=1636251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| || |||||| | || | |||||| ||| ||||||| || || Sbjct 1463599 GACTCTTTCTGGATGTTGCAGTCTGAAAGAGTGCGG-----CTCCGGCTGTTTGCCCGCA 1463545 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || ||||||||||| || | || ||||||||||||||| |||||| || || Sbjct 1463544 AATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGTCTTGAATTTTGGCCTTGACG 1463485 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || ||||||||||| ||| | | | || || || || || Sbjct 1463484 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGATCCTACCTGTGAGGGTCTTC 1463425 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 1463424 ACAAAGATCTGCAT 1463411 >seq12761 Length=1273535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || |||| ||| || ||||| ||||| | |||| | |||||| Sbjct 705777 CACCACCTGCAGGGTGGACTGTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 705836 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || | | || ||| ||||||| || || | |||||||||||||| Sbjct 705837 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTAGGATGCCCTCCTTGTCATG 705896 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| ||||||| || || || ||| | ||| | ||| | Sbjct 705897 GATCTTGGCTTTGACATTTTCACCGGTGTCACTGGGCTGGAACTCAAAGGTGATGGTTCT 705956 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || |||||| | ||||||||| || Sbjct 705957 TCCTGTGAGGGTCTTTACAGAGATCTGCATGTCT 705990 >seq11136 Length=3384853 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/229 (69%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 118515 CCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA 118574 || || | ||||||||| || || | ||||||||||||||||| ||||| || || | Sbjct 1795546 CCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAA 1795605 Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGA-TCG--GGAGGT 118631 || || ||| || || || || ||||| |||| || | ||||||| | | ||||| Sbjct 1795606 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACTAGGAGGAGGA 1795665 Query 118632 ATGCCCTCCTT-GTCTGTAATTTTTTGTTTA-ACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || || ||||| ||| | | || | || || | ||| | ||||| | | || Sbjct 1795666 ATTCCTTCCTTAACCTGGA--TCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAT 1795723 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | || || || || || ||| | || ||||||||||| Sbjct 1795724 CCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 1795772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433275063466144