Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq465 125 8e-24 seq10591 123 3e-23 seq21443 114 1e-20 seq11610 105 8e-18 seq7894 100 3e-16 seq20904 98.7 1e-15 seq18021 98.7 1e-15 seq782 98.7 1e-15 seq621 96.9 4e-15 seq6496 95.1 1e-14 seq10379 93.3 5e-14 seq8696 93.3 5e-14 seq7942 89.7 6e-13 seq1776 84.2 2e-11 >seq465 Length=2116526 Score = 125 bits (138), Expect = 8e-24 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 2111683 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 2111624 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | | ||||||| Sbjct 2111623 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 2111564 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 2111563 TCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 2111505 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||||||||||| || ||||| |||||||| ||||| ||| || Sbjct 2111504 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 2111462 >seq10591 Length=527945 Score = 123 bits (136), Expect = 3e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 132107 CGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 132166 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | | ||||||| Sbjct 132167 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 132226 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 132227 T-CTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 132285 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||||||||||| | |||||||||||||| ||||| ||| Sbjct 132286 GGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTTT 132325 >seq21443 Length=656158 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| |||| || |||||| || || ||||| |||| Sbjct 30095 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 30154 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 30155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 30214 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| |||||| || | | | | ||||| || | ||||| Sbjct 30215 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 30274 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 30275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 30327 >seq11610 Length=4244388 Score = 105 bits (116), Expect = 8e-18 Identities = 77/89 (87%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 60057 AAAAATT----TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||| |||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 3735126 AAAAATTAGGATTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 3735185 Query 60113 ATACTCACCACTATACTACCGAGGATTGA 60141 |||||||||||||||||| |||||| ||| Sbjct 3735186 ATACTCACCACTATACTAACGAGGAGTGA 3735214 >seq7894 Length=720612 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 656488 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 656547 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 656548 ATACTAACGAGGA 656560 >seq20904 Length=1731647 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 315943 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 316002 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 316003 TACTAACGAGGA 316014 >seq18021 Length=561722 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 80931 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 80990 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 80991 TACTAACGAGGA 81002 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 54492 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 54551 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 54552 ACTATACTAACGAGGA 54567 >seq782 Length=6300357 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3432359 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3432300 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3432299 TACTAACGAGGA 3432288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3435955 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3435896 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3435895 TACTAACGAGGA 3435884 >seq621 Length=1137327 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| |||| ||| || ||||| || ||||| || | ||||| | | || || Sbjct 429901 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCC 429960 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| ||||| || ||||||||||| | || | | |||||||| | || Sbjct 429961 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTG 430019 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | ||||| || | |||| || | || || || | |||||||| || Sbjct 430020 AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTT 430079 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| ||||||| ||||| Sbjct 430080 GCCCGTGAGGGTCTTCACAAAGAGCTGCAT 430109 >seq6496 Length=1565906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || || | ||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1531343 CCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATA 1531284 Query 60128 CTACCGAGGA 60137 ||| |||||| Sbjct 1531283 CTAACGAGGA 1531274 >seq10379 Length=4916278 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 1637652 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 1637593 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||| || ||||| ||||| || ||| |||||| | || | | ||||||| Sbjct 1637592 TCTTCCAGCTAATTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCCTTG 1637533 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | ||| ||| | |||| || | | ||||| || | || || || | | ||| Sbjct 1637532 TGT-TGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGGGAT 1637474 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 ||||||||| || || ||||| |||||||| ||||| ||| Sbjct 1637473 GGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTTT 1637434 >seq8696 Length=3102680 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 941164 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 941223 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 941224 ATACTAACGAGGAGTG 941239 >seq7942 Length=6194911 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||||| |||||||||||||||||||||||| | |||||||| | ||| ||||||||| Sbjct 195783 CTCCTCATCAGGGAATCGAACCCTGGTCTCCCACATGACAGGCAGGGATATTCACCACTA 195842 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 195843 TACTAACGAGGA 195854 >seq1776 Length=1009680 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 76294 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 76235 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || || |||| ||||| || | || | | ||||| || Sbjct 76234 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 76175 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||| || | ||| || |||| |||||||| Sbjct 76174 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 76115 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || || || || || |||||||| Sbjct 76114 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 76079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571066860672960