Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq841 1476 0.0 seq7942 132 3e-26 >seq841 Length=7332055 Score = 1476 bits (1636), Expect = 0.0 Identities = 1282/1587 (81%), Gaps = 37/1587 (2%) Strand=Plus/Minus Query 107194 CATCACTCTGGAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATT 107247 ||||| | |||| |||||||||||||| |||| |||||||||||| | ||||||| Sbjct 576771 CATCAGTTTGGAATTGAACTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATT 576712 Query 107248 TTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATC 107303 |||||||||| |||||| |||||||| |||| ||||||| ||| ||| |||| || Sbjct 576711 TTGTTCTGTCGAAGGATTGTGTCCTCCTCTTCCTTCCCTGTGCTCAATCTCCACCTG-TC 576653 Query 107304 TCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGG 107363 | || | || ||| |||| | ||||||| || || |||| | ||| | ||||| Sbjct 576652 TACCCTTCCGTGACAATGGTTCAATGGAAGA-GA--CTCTGCCAGCAGCATTACTTGTGG 576596 Query 107364 GCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAA 107423 ||||||||||||||||||||||||| | ||| |||||| |||||| | ||||| || Sbjct 576595 GCCCTGGGCTGCTATATGCTGCTGGTCACTGTGGCTCTGAAACTTTCTTTAAGGTTGAAG 576536 Query 107424 TGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGAC 107483 |||| || ||||| |||| |||||||||| || || || ||| |||||||| | Sbjct 576535 TGTGGCTCTGACCACTTGGGTCTGCAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAAT 576476 Query 107484 ATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACG 107543 || ||||| ||| |||||| |||||||||||||| || ||||||||||| ||| |||| Sbjct 576475 ATCTTGTATAATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGGTCACC 576416 Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 |||||||||| ||||| ||| | || || | || | |||||||| || ||||| ||| Sbjct 576415 CGAGGGGACCCAGAAGCCGTGTTTCACGCTATTCTGAATAACCTGGAGGTCAAGAAGAAG 576356 Query 107604 CGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAG 107663 ||| |||| | || | |||| | || ||| | | |||||||||||||| ||||||||| Sbjct 576355 CGGGAGCCTTTTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAG 576296 Query 107664 GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCC 107723 || |||||||||||||||||||||||||||| ||||||||| | || ||||| ||||| Sbjct 576295 GCGGAAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCG 576236 Query 107724 TACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTAT 107783 ||||| |||||| | |||||||||||||||||||||||| |||| |||||||| |||||| Sbjct 576235 TACTCTATGGTGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTAT 576176 Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAG 107843 ||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||| Sbjct 576175 GCCCCTCAGAACATATACTGTATTCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAG 576116 Query 107844 GCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCG 107903 || ||||| || |||||||| |||||||| ||||||||||| ||||||||| |||| | | Sbjct 576115 GCAGTCAAAGCAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGG 576056 Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963 ||| |||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct 576055 GTGATTTATGCCTCCTGGTCTAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTC 575996 Query 107964 CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023 |||||||| ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 575995 CAGAGCTCGGTGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAG 575936 Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083 | ||||||||||||||||| ||| |||||||||||||| || | ||| || |||||| | Sbjct 575935 AGCAATGCCGAGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACA 575876 Query 108084 GAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGAC 108140 ||||||||| || || |||| ||| |||||| |||| | || |||| ||| |||| Sbjct 575875 GAGGTACCTCCTAAGCACAAACAAACCCGCTGGGAATATCACTTTGAGGTAGTGGGAGAC 575816 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 ||| | ||| |||| ||||| |||||| ||||||||| |||||||| | ||||| ||| Sbjct 575815 ACATTACACCTAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACA 575756 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||| ||| ||||||| || |||| |||||||||||||| || | ||||| ||| Sbjct 575755 GGGAATGCGTATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCAAAA 575696 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||||| |||| |||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 575695 TCCCAACAACTGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCC 575636 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 |||||||||||||| | ||||||||||||||||||||| | |||| |||||| ||||| Sbjct 575635 ACCCTTCAGCGTGCACGGTGGATGCCTGGCTCTGTTCCCAATCACCGCAAGTACGACATC 575576 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 |||||||||||| | || |||||||| |||||||||||| ||| |||||||| || Sbjct 575575 TCAGACATGACTTCTATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAGACATCGAT 575516 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | ||| || ||||||| || |||||||||||||| | | |||| ||||| |||| ||| Sbjct 575515 AAGGGTGCTCCTTATGGCCCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGG 575456 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || |||||| || ||||||| || || ||||||||||| ||||| |||||||||||||| Sbjct 575455 GCTGGGGACTTGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCA 575396 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||| |||||||| | || |||||||||||||||||||||||| |||||||||||||| Sbjct 575395 AAGGTAGATGATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTAT 575336 Query 108621 GGGACTGAACTTTGAGCTGCACT-------------------GTGGGCCAGGGACTGTGC 108661 |||||||||||||||| |||| | |||| || | ||| | Sbjct 575335 GGGACTGAACTTTGAGACACACTACGGGAGCATTGCTACCTGGGGGGCAAGAGCATGTAC 575276 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721 ||||||| || | | |||| || ||| ||||||| ||| |||||| || ||| ||| Sbjct 575275 AAACATGCTCAAAACTTGCTGGGACAGTG-CGGGTGGGAGACTAGGGCTTTGCAATTCAT 575217 Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||| |||| | || || ||||| Sbjct 575216 GGCATCCCTCAGGATAAGGGGTCTGCT 575190 >seq7942 Length=6194911 Score = 132 bits (146), Expect = 3e-26 Identities = 572/896 (64%), Gaps = 49/896 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 1783373 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 1783432 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 1783433 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 1783492 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | | ||| |||| Sbjct 1783493 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGACAGGCATCGCTTCC 1783549 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 1783550 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 1783609 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 1783610 CGGGTTCAGGCTGACCTTAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 1783666 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 1783667 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 1783726 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAG 108098 | || ||| |||| | ||| | ||||| |||| | || | | || || | Sbjct 1783727 AGGAAGCTGAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCA- 1783785 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACA 108143 ||| || | | |||||| | || ||||||| ||||| ||||| Sbjct 1783786 --TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGCTGACAAACACA 1783843 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| || | ||||| | || | ||| | || | || Sbjct 1783844 GGG------ACTGTCAAAAT---GCTTCCTCCGCTCGAAA---CACCTCTTTTTTCTGGC 1783891 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| ||||||| | | ||| | ||| |||| || | || ||| | Sbjct 1783892 AGTGCCTACTTTGTGGTCAGTAGAGAGTATGTGGGGTATGTACTACAGAATGAAAAACTC 1783951 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 1783952 CAAAAGTTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 1784011 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCT 108381 | ||| | | | | || | | || ||||| || || |||| || ||||| | | | Sbjct 1784012 ATCCAGAG-GATTCCTGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTGT 1784069 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||| ||| ||||| ||||| || Sbjct 1784070 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCCA 1784129 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| ||| |||| | | | | ||||||| || | Sbjct 1784130 AGGGTGCCCCCTACCCTCCCTGCGATGGGGTCCACGTGCGCTCGGTGTGCATTTTTGGAG 1784189 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||| || ||||||| || | ||||| ||| | || || || ||||||||| Sbjct 1784190 CTGGTGACTTGAACTGGATGCTGCGCAACCACCACTTGTTTGCCAATAAGTTTGAC 1784245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347822988945168