Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10346 268 9e-67 seq1811 156 4e-33 seq985 114 1e-20 seq102574 93.3 4e-14 seq7578 93.3 4e-14 >seq10346 Length=345594 Score = 268 bits (296), Expect = 9e-67 Identities = 535/779 (69%), Gaps = 23/779 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | ||||| ||| || | || | | || | || ||||| | Sbjct 268928 TAGAAGTCAGCATCCAAGGTAAAAA-ATTCTC-TGTTGGACTTGACACCACTCCCATCCT 268985 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || ||||||||||| || ||| |||||| ||||| || Sbjct 268986 CTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTC 269040 Query 13975 CATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||||| |||||||| || | | | ||| ||| ||| |||| ||||| | | Sbjct 269041 CATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA-AACCCAGTTCCAGCATG- 269098 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 ||| || || | |||||||| ||||| ||||| | |||||||| || || | | Sbjct 269099 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 269157 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 | ||||| | | || | ||||| | |||||| ||||| | | | || || Sbjct 269158 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATT- 269216 Query 14154 TCGTAATAATTTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAAATTAAACACGCA 14209 || | || | || | | | | || | | || | ||||| || || | || ||| Sbjct 269217 TC-TCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCA 269273 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 |||||||| || | ||||||||||| ||||||||||| || |||||||| | || ||| Sbjct 269274 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 269333 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 |||| ||||||||| || | ||| ||||| | || || | || ||||||| | || Sbjct 269334 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCT 269390 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14389 || |||||||||| ||| | ||||| ||| | | |||| ||||| | ||||| Sbjct 269391 TCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAG 269450 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 | ||||| || | || || || | | || ||| |||||||| ||||| | | | Sbjct 269451 TGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGA 269510 Query 14450 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14509 |||| | ||||| | | | ||||| || |||||||| || |||||||||||||| Sbjct 269511 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 269570 Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14569 |||||||| || || || || || || ||| | ||||| | ||||||| | || || Sbjct 269571 TGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACT 269630 Query 14570 TCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||| | ||||| || |||| |||||||| ||||| |||||||| |||||||| || Sbjct 269631 TCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 269689 >seq1811 Length=1713758 Score = 156 bits (172), Expect = 4e-33 Identities = 296/431 (69%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | | Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| ||||||||| || | ||| ||||| || || || || |||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 | | || ||| ||||||||| | ||||||||| | | | ||||||| Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 77938 Query 14384 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | | || |||| | | || || || | | | |||||||||||| ||||| Sbjct 77937 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 77880 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 || | | |||| | ||||| || | |||| ||| |||||||| | ||| || Sbjct 77879 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTAT 77822 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 ||||| ||| ||||||| ||||| | || || ||||| || || | ||||| Sbjct 77821 GTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 77762 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || | ||| |||| ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 77761 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 77702 Query 14623 AAAAAATGCCA 14633 ||| || |||| Sbjct 77701 AAAGAAAGCCA 77691 >seq985 Length=6397689 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 2227123 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2227064 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 2227063 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2227004 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 2227003 CTACAACACGTTCACC 2226988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2229273 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2229215 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2229214 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2229155 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 2229154 CATAAAGTCAAATGGGTT 2229137 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 2225014 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 2224955 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 2224954 AAGCCATAGAAACAGCGGGCTTCTG 2224930 >seq102574 Length=646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 493 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 551 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 552 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 611 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 612 CATAAAGTCAAATGGGTT 629 >seq7578 Length=1327334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 838472 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 838414 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 838413 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 838354 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 838353 CATAAAGTCAAATGGGTT 838336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481712328461760