Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10346 149 6e-31 seq8820 107 2e-18 seq21443 105 6e-18 seq782 104 2e-17 seq10591 102 7e-17 seq465 102 7e-17 seq23525 100 3e-16 seq1776 96.9 3e-15 seq69432 87.8 2e-12 >seq10346 Length=345594 Score = 149 bits (164), Expect = 6e-31 Identities = 419/634 (66%), Gaps = 21/634 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || || || ||| || || | | |||||||| || || | || || | Sbjct 269881 GATGAGCCGCTGCTGAGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCAT 269822 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | ||||| || ||||| ||||| || || ||||||| ||| || || ||| Sbjct 269821 GATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGAC 269762 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||| ||||| | | | ||||| ||||| || |||||| ||||||| Sbjct 269761 CTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCAAGGAGAGAGATTTTATATCC 269702 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || ||| || || || ||| ||||| || || || || || ||||| || || Sbjct 269701 CATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGA 269642 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| |||||||| || |||| || || | || || | || || ||| | ||||| Sbjct 269641 TTTAGCCAAGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATA 269582 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | ||||| ||||||||| | || || || || ||| | || || | | Sbjct 269581 GAGAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAA- 269523 Query 57867 GAGAAACGTAGACTGT--TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||||| | | | | |||| || || ||||| ||||| || |||||||||| Sbjct 269522 -AGAAAGGGAATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 269464 Query 57925 AGTGGTCAATCAAATGGAT-----AAAAAG-CGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 | ||| | | | ||||| | |||| || || | | | | || | | || Sbjct 269463 ATTGGGCCTTGCACTGGATTGGGGACAAAGAAGCTAC--CTATGGTGAACGTGTTG-TAG 269407 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 || || || || | ||||| | ||||||| || ||||| | ||||| ||| Sbjct 269406 TC---TTTGCTGCAGCGGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGC 269353 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGAC 58097 | |||||||| || |||||||| ||||| || ||| ||| || | || | || | || Sbjct 269352 TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTAT-TAGCAGAGAT 269294 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 |||||| | || ||||||||| ||||| |||| Sbjct 269293 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGT 269260 >seq8820 Length=2893063 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 2560735 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 2560676 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 2560675 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 2560616 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || || ||||| ||||| || Sbjct 2560615 CCTGTTTCTGTTTGAGACTCAATGATGGC 2560587 >seq21443 Length=656158 Score = 105 bits (116), Expect = 6e-18 Identities = 165/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 30326 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 30268 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | ||| ||| ||||||||| | || ||| Sbjct 30267 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 30208 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 30207 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 30148 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| || || ||||| || | ||||| || |||| Sbjct 30147 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 30093 >seq782 Length=6300357 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 3450425 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 3450484 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 3450485 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACCA 3450543 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || ||||| |||||| ||||||| | | | || || || || | Sbjct 3450544 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 3450602 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| || |||| || | ||||||| ||| Sbjct 3450603 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 3450652 >seq10591 Length=527945 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || |||||||| | || |||||||| |||||| | || || || | Sbjct 132326 CAAACATGCAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGAGC 132267 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 132266 CCAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 132207 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| ||||| || ||||||||| ||||||| ||| | || | Sbjct 132206 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 132147 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || ||||| || || || || ||||| Sbjct 132146 ACAACATCCACAAAGAGTCCACCCTGCACCTGGT 132113 >seq465 Length=2116526 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| | || || || | Sbjct 2111464 CAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGC 2111523 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 2111524 CCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 2111583 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| ||||| || ||||||||| ||||||| ||| | || | Sbjct 2111584 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 2111643 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || ||||| || || || || ||||| Sbjct 2111644 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 2111677 >seq23525 Length=221919 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || ||||| || || |||||| |||| |||||||| Sbjct 220010 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 219951 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 219950 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 219891 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 219890 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 219832 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 219831 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 219790 >seq1776 Length=1009680 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 76079 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 76138 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 76139 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 76198 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 76199 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 76257 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 76258 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 76299 >seq69432 Length=13378 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||| ||| || ||||| | || || || |||||| |||| |||||||| Sbjct 12561 AAAATGCAGATTT-CGTGAAAACTCTTATGGGGAAGACCATCACCCTCGAGGTTGAACCC 12503 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 12502 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 12443 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 12442 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 12384 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 12383 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 12342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445181153293440