Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10346 250 2e-61 seq1811 165 8e-36 seq17275 114 1e-20 seq8820 93.3 4e-14 >seq10346 Length=345594 Score = 250 bits (276), Expect = 2e-61 Identities = 616/915 (67%), Gaps = 31/915 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| || | |||| || | || | Sbjct 268953 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCCGTTACTC-TCTTCTCAA 269011 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 269012 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 269066 Query 11427 TGAAGACTTTT-TCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATAC 11485 |||| || || ||| |||| | || | ||| ||||| || || || || || Sbjct 269067 TGAAAACCTTGCTCA-AACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTAT 269123 Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || ||||| | |||||||| || ||| | | ||| || | || | || | || Sbjct 269124 TGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAAT 269183 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGG 11604 |||| |||||| ||| |||| || ||||| ||| | || | || |||| Sbjct 269184 TCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTCTACTCCAG-TGGTTT 269242 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| | || ||||||||||| |||||||| || ||||| || Sbjct 269243 GTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 269302 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| |||||||| | || ||||||| ||||||||| || | ||| ||||| Sbjct 269303 AATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 269362 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| ||||||||||| || || ||| | || ||||| |||| || | ||| Sbjct 269363 CGATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTC 269419 Query 11785 TCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| | ||||||||| || ||||| || || Sbjct 269420 ACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGAC 269479 Query 11842 GCATTCCATTGTTTCTATAGCGTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| ||||| || || || | | |||| | ||||| | |||| ||| Sbjct 269480 ACAAGGCATCGTTTCAATGGCATTGAGGAGAAATTC--CCTTTCTTTGGGATCTTTTATG 269537 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | |||||||||||||| ||||| || || || || || ||||| || Sbjct 269538 TAAGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAG 269597 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||| ||||||| || || |||| ||| || || ||||| ||| | || || Sbjct 269598 CCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTT 269657 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 |||||||| || |||||||| | |||||| || | || | ||| |||||| || | Sbjct 269658 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAA--ATCTC 269715 Query 12080 TCGTCTTTAG-TTAATTTA-TCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCTTC 12135 || ||| | || | | ||||| | | ||| || || || | || || || || Sbjct 269716 TCTCCTTGGGCTTCAGGGATTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTC 269773 Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 ||||||| || || | | | |||||||| | |||||||||||| |||| | Sbjct 269774 GGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGGT 269833 Query 12196 AGGGAAAATAACGAA 12210 ||||| || || || Sbjct 269834 GGGGAAGATGACAAA 269848 >seq1811 Length=1713758 Score = 165 bits (182), Expect = 8e-36 Identities = 319/463 (69%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | | Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| ||||||||| || | ||| ||||| ||||| |||||||||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 77938 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | | ||||| | || ||||| || || || ||||||||| || || Sbjct 77937 ---ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 77882 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | | ||| Sbjct 77881 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGATTAT 77826 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| | ||||| ||||| |||| || |||||||| || | |||| Sbjct 77825 TTATGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTG 77766 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | || || |||| ||| || ||||||| | Sbjct 77765 TAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 77706 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 77705 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 77663 >seq17275 Length=3305369 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 1143215 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1143156 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1143155 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1143096 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1143095 CCACCACTCTTTCCCC 1143080 >seq8820 Length=2893063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 2569787 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2569728 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 2569727 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2569668 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 2569667 CTGTTTCTTATACCAT 2569652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467909673790080