Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10346 315 9e-81 seq2366 163 4e-35 seq8820 114 2e-20 seq17275 111 2e-19 seq985 104 3e-17 seq3648 86.0 8e-12 >seq10346 Length=345594 Score = 315 bits (348), Expect = 9e-81 Identities = 572/830 (69%), Gaps = 18/830 (2%) Strand=Plus/Plus Query 35917 TGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA 35976 ||| ||||| ||||| || || ||||| || || | ||| || | || |||| Sbjct 269029 TGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAG 269088 Query 35977 TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCAT 36036 ||| || ||| ||||| ||||| || || ||| ||||| | |||||||| Sbjct 269089 TTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 269146 Query 36037 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 36096 || ||| | || || || | ||| |||| || ||||| ||||| || || || | Sbjct 269147 CCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATT 269206 Query 36097 TGTTATAATAGATATTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCA 36155 | || || | ||||| | | || || | | | | | | | ||||| ||||||| Sbjct 269207 GATAATTATTTCTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCA 269265 Query 36156 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 36215 || || ||||| ||||||| |||||| ||||| ||||| | ||| |||||||| |||| Sbjct 269266 GGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGA 269325 Query 36216 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 36275 | || ||||| || || || || || ||||| ||||| || ||||| | |||||||||| Sbjct 269326 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA 269385 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCAT 36332 | ||||| |||| |||||| | | || | || ||||| | | | |||| Sbjct 269386 ---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCC 269442 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| | |||||||| |||||||| || ||||||||||| || || || |||| Sbjct 269443 CAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCAT 269502 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 | | |||| | | |||| || |||||| | || || ||||| | | |||||||| Sbjct 269503 TGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 269562 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 |||| ||||| ||||| || ||||| ||||| || || ||||||| | || || || | Sbjct 269563 TTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 269622 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 |||| |||||| | |||||| || | || |||||||| ||||| || ||||| |||| Sbjct 269623 TCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTG 269682 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT 36632 |||| || ||| ||||| |||||||| | | || || || | || ||||| Sbjct 269683 CAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAG-GGATTCC--- 269738 Query 36633 CATTG----ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || || || || || || | ||||| || || | ||||| || || || || ||| Sbjct 269739 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCC 269798 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || |||||||| | |||||| ||||| || | | || || || ||||| Sbjct 269799 TTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 269848 >seq2366 Length=2695947 Score = 163 bits (180), Expect = 4e-35 Identities = 157/201 (78%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277 |||||| ||| || |||||| | |||||| || | ||||||| |||| || ||||| Sbjct 1356398 TTTTAA---TTACTTTTTATTAACTGCTTCCAGAAACCGTAACAGGTGCAGAAATAGATT 1356342 Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337 ||||||||||||||||| |||| | ||||| || || |||||||| || || ||||| Sbjct 1356341 GATGATATCCAAGTAGAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGACAGTTTATG 1356282 Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397 || |||||||| ||||||||||| |||||||| ||||| | |||||| || ||||| Sbjct 1356281 CATCAGTGAGTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCAGC 1356222 Query 9398 CAGGACCAGCTCCACTGTTTC 9418 | ||||| ||||| ||| || Sbjct 1356221 TAAGACCAACTCCATTGTCTC 1356201 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||| ||||| |||||||||||||| |||||| | ||| | Sbjct 1348287 CCAGCTCCAAATTTGCTGAAATCCCTCTTAGATTGTAGAGTATACACAGTCAAACCAAAA 1348228 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||| ||||||||| ||||||||||||| || | || ||||||||||||||||| Sbjct 1348227 AATACTGTAGTAGTCAGTATGAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 1348169 Score = 93.3 bits (102), Expect = 6e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct 1325121 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCGTCCTCGA 1325062 Query 9907 TGGAGGAGCACGCGTA 9922 | |||||||| | ||| Sbjct 1325061 TCGAGGAGCAAGGGTA 1325046 >seq8820 Length=2893063 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 2572628 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2572569 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 2572568 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 2572509 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 2572508 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 2572458 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 2569787 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 2569728 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 2569727 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 2569668 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 2569667 CTGTTTCTTATACCATA 2569651 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| ||||||||||||||||||||||| | || | |||||||| | Sbjct 2559111 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 2559052 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 2559051 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 2558992 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || |||| ||| || || | ||||||| || Sbjct 2558991 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 2558959 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 2541362 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 2541303 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2541302 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2541243 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 2541242 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 2541197 >seq17275 Length=3305369 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1143213 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1143154 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1143153 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1143095 >seq985 Length=6397689 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 2225021 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2224962 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 2224961 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 2224902 >seq3648 Length=3343546 Score = 86.0 bits (94), Expect = 8e-12 Identities = 176/258 (68%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || || ||||| ||| ||| | ||| | | ||| ||| | || ||| |||||| Sbjct 2094918 TCCAGTGGAACCAAAACCTCCTGAACCCCTTT--CGGTATCATCCAAAGCTTGAACTTCT 2094975 Query 33958 TTCAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 34016 | | |||||||||| | | | |||| | || ||||| || ||| ||| ||| | || Sbjct 2094976 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 2095035 Query 34017 TACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATC 34076 || | || | ||| ||| |||| || | || || | |||||| |||||||| Sbjct 2095036 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATC 2095095 Query 34077 TTCGTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAGG 34133 ||| |||| ||||| |||||| ||||||| |||| | || || |||| || Sbjct 2095096 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 2095155 Query 34134 AGCTATTCTACCATAGCA 34151 ||||| ||| ||||| || Sbjct 2095156 AGCTACTCTTCCATAACA 2095173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657308684930880