Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2874 138 1e-27 seq64438 120 3e-22 seq1020 111 1e-19 seq15621 82.4 7e-11 >seq2874 Length=3733233 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 1920573 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 1920514 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 1920513 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 1920454 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 1920453 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 1920410 >seq64438 Length=1527 Score = 120 bits (132), Expect = 3e-22 Identities = 133/177 (75%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 |||||| | || || ||||| || || |||||||| || || | ||| |||||| ||| Sbjct 954 GTAAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTGATGTG 1013 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| ||| || || |||||||||||||||||||| || || | || |||||| Sbjct 1014 CGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAA-GGTGCACCCAGGCCC-- 1070 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTG 21121 | ||||| |||| |||||||||||||||||| || ||||| | ||||| Sbjct 1071 -----CTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 1122 >seq1020 Length=1834505 Score = 111 bits (122), Expect = 1e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| | | Sbjct 1061638 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 1061579 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 1061578 TCTCTGCTGAGAACTAAATTAATTCTATCCTTGAAAGGTCGATTCTTCTCAGGAATGGAG 1061519 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | |||||||| |||| ||||| || |||| | || || | | | Sbjct 1061518 AACCAGGTCTACCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAAGGTGTG 1061459 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| || || || ||||| |||| || || Sbjct 1061458 GTCATTCTCTGGAAATACCTGAATTCATTCCTGAGCGGAGGCCAGGGCAGGTCCCCATTC 1061399 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || ||||| || | | || || || ||||||||||| Sbjct 1061398 TTGCCAATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 1061358 >seq15621 Length=1628728 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||||||| | |||||| || || ||||| | ||| Sbjct 562975 TCTCTGCTGAGAACTAAATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 562916 Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| | |||| | |||||||| |||| ||||| || |||| | | || | || | Sbjct 562915 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 562857 Query 3142 CGTCATTTTCTGAAAATAC 3160 |||||| |||| |||||| Sbjct 562856 GGTCATTCTCTGGAAATAC 562838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427228413567360