Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq10346 104 2e-17 seq1811 87.8 1e-12 >seq10346 Length=345594 Score = 104 bits (114), Expect = 2e-17 Identities = 389/595 (65%), Gaps = 40/595 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || ||||||| ||||||||||| || | || Sbjct 269809 ATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGAC 269750 Query 22405 GTACGCCATTGGACAGAAAAACTGA--CCGAGGCTGAGCGCAGGTTCATGTCTCACATAC 22462 | | || ||| ||| |||| || | | ||| | || || || || | | Sbjct 269749 ATTTGGCACTGG---GAATCCCTGAAGCCCAAGGAGAGAGAT--TTTATATCCCATGTTC 269695 Query 22463 TGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTC 22518 ||| ||||||||| ||| |||||||| ||| || ||| | ||| || |||| Sbjct 269694 TGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTA 269638 Query 22519 GCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATG 22578 || || ||| || | || |||||||| | ||||| ||| || || | || || Sbjct 269637 GCCAA-GAAGTTCAG---ATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATA 269582 Query 22579 GAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG--- 22635 || || |||||| |||||||||||| | || ||| ||| | || ||||| Sbjct 269581 GAGAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATA---AAAGATCCC 269525 Query 22636 -AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCA 22692 || ||| || | ||| || |||| ||||| ||||| || |||||| Sbjct 269524 AAAGAAAGGGAATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCA 269465 Query 22693 CAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTCT 22747 | ||||| ||||| ||| | | ||| | ||| |||| | | |||| | Sbjct 269464 GATTGGGCCTTGCAC--TGGATTGGGG--ACAAAGAAGCTACCTATGGTGA-ACGTGTTG 269410 Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 | | |||||| || | |||||| || |||||||| | ||||| | |||||||||| Sbjct 269409 TAGTCTTTGCTGCAGCGGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGGC 269353 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||| || | |||||| | || | Sbjct 269352 TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATG 269293 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 269292 AGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACC 269238 >seq1811 Length=1713758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 22777 TTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTG 22836 |||||||| || ||||| ||||||||||| |||||||| || ||||| || | Sbjct 78002 TTTTCTGGTTCTTTTGCACTGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGACTC 78061 Query 22837 GCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 | |||||||| || | |||||| |||| || ||| |||||||| |||||||||| Sbjct 78062 ACATTTTCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACTTTGCTTG 78117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355777593383896