Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10346 280 1e-70 seq1811 165 8e-36 seq985 120 3e-22 seq102574 93.3 4e-14 seq7578 93.3 4e-14 >seq10346 Length=345594 Score = 280 bits (310), Expect = 1e-70 Identities = 538/780 (69%), Gaps = 25/780 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | ||||| ||| || | || | | || | || ||||| | Sbjct 268928 TAGAAGTCAGCATCCAAGGTAAAAA-ATTCTC-TGTTGGACTTGACACCACTCCCATCCT 268985 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || ||||||||||| || ||| |||||| ||||| || Sbjct 268986 CTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTC 269040 Query 13643 CATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 13701 |||||| |||||||| || | | | ||| ||| ||| |||| ||||| | | Sbjct 269041 CATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA-AACCCAGTTCCAGCATG- 269098 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 ||| || || | ||||||||| ||||| ||||| | |||||||| || || | | Sbjct 269099 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 269157 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | ||||| | | || | ||||| | |||||| ||||| | | ||||| | Sbjct 269158 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT---TGATAATTA 269214 Query 13822 TTG-TAATAATCTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAAATTAAACACGC 13876 || | || |||| | | | | || | | || | ||||| || || | || || Sbjct 269215 TTTCTCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGC 269272 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||||||||| || | ||||||||||| ||||||||||| || |||||||| | || || Sbjct 269273 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 269332 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||||| ||||||||| || | ||| ||||| | ||||| | || ||||||| | || Sbjct 269333 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCC 269389 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 || |||||||||| ||| | ||||| ||| | | |||| ||||| | ||||| Sbjct 269390 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 269449 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | ||||| || | || || || | | || ||| |||||||| ||||| | | Sbjct 269450 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAG 269509 Query 14117 ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 | ||||| | ||||| | | | ||||| || |||||||| || |||||||||||||| Sbjct 269510 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGA 269569 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 |||||||| || || || || || || ||| | || || | ||||| | | || || Sbjct 269570 ATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAAC 269629 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| | ||||| || |||| |||||||| ||||| |||||||| |||||||| || Sbjct 269630 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 269689 >seq1811 Length=1713758 Score = 165 bits (182), Expect = 8e-36 Identities = 298/431 (69%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | | Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||||||||| || | ||| ||||| ||||| || || |||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || ||| ||||||||| | ||||||||| | | | ||||||| Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 77938 Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | | || |||| | | || || || | | | |||||||||||| ||||| Sbjct 77937 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 77880 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | ||||| | ||||| || | |||| ||| |||||||| | ||| || Sbjct 77879 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTAT 77822 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||| ||| ||||||| ||||| | || || ||||| ||||| | ||| | Sbjct 77821 GTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 77762 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || | ||| |||| ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 77761 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 77702 Query 14291 AAAAAATGCCA 14301 ||| || |||| Sbjct 77701 AAAGAAAGCCA 77691 >seq985 Length=6397689 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 2227123 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2227064 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 2227063 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2227004 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 2227003 CTACAACACGTTCACC 2226988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2229273 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2229215 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2229214 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2229155 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 2229154 CATAAAGTCAAATGGGTT 2229137 >seq102574 Length=646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 493 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 551 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 552 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 611 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 612 CATAAAGTCAAATGGGTT 629 >seq7578 Length=1327334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 838472 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 838414 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 838413 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 838354 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 838353 CATAAAGTCAAATGGGTT 838336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479098165108800