Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10346 266 3e-66 seq1811 150 2e-31 seq985 114 1e-20 seq102574 84.2 2e-11 seq7578 84.2 2e-11 >seq10346 Length=345594 Score = 266 bits (294), Expect = 3e-66 Identities = 535/780 (69%), Gaps = 25/780 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | ||||| ||| || | || | | || | || ||||| | Sbjct 268928 TAGAAGTCAGCATCCAAGGTAAAAA-ATTCTC-TGTTGGACTTGACACCACTCCCATCCT 268985 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| ||||| || ||| |||||| ||||| || Sbjct 268986 CTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTC 269040 Query 13431 CATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||||| || ||||| || | | | ||| ||| ||| |||| ||||| | | Sbjct 269041 CATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA-AACCCAGTTCCAGCATG- 269098 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 ||| || || | ||||||||| ||||| ||||| | |||||||| || || | | Sbjct 269099 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 269157 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 | ||||| | | ||| | ||||| | |||||| ||||| | | ||||| | Sbjct 269158 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTG---ATAATTA 269214 Query 13610 TCT-TAATAATGTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAAATTAAACACGC 13664 | | | || | || | | | | || | | || | ||||| || || | || || Sbjct 269215 TTTCTCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGC 269272 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||||||||| || | ||||||||||| ||||||||||| || |||||||| | || || Sbjct 269273 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 269332 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||||| ||||||||| || | ||| ||||| | || || | || ||||||| | || Sbjct 269333 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCC 269389 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 || |||||||||| ||| | ||||| ||| | | |||| ||||| ||||| Sbjct 269390 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 269449 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | ||||| || | || || || | | || ||| ||||| || ||||||| | Sbjct 269450 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAG 269509 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 | |||| | ||||| | | | ||||| || |||||||| || |||||||||||||| Sbjct 269510 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGA 269569 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 |||||||| ||||| || || || || ||| | ||||| | ||||||| | || || Sbjct 269570 ATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAAC 269629 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || | ||||| || ||||||||||||| || || |||||||| |||||||| || Sbjct 269630 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 269689 >seq1811 Length=1713758 Score = 150 bits (166), Expect = 2e-31 Identities = 295/431 (68%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | | Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| ||||||||| || | ||| ||||| || || || || |||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | | || ||| ||||||||| | ||||||||| | | | |||||| Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 77938 Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | | || |||| | | || || || | | | ||||||||| || ||||| Sbjct 77937 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 77880 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | |||| | ||||| || | |||| ||| |||||||| | ||| || Sbjct 77879 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTAT 77822 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||| ||| ||||||||||||| | || || ||||| || || | ||||| Sbjct 77821 GTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 77762 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || | || |||| ||| |||||||||||| || || ||||||| ||||| Sbjct 77761 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 77702 Query 14079 AAAAAATGCCA 14089 ||| || |||| Sbjct 77701 AAAGAAAGCCA 77691 >seq985 Length=6397689 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 2227123 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2227064 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 2227063 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2227004 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 2227003 CTACAACACGTTCACC 2226988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2229273 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2229215 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 2229214 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2229155 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 2229154 CATAAAGTCAAATGGGTT 2229137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 2225014 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 2224955 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 2224954 AAGCCATAGAAACAGCGGGCTTCTG 2224930 >seq102574 Length=646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 493 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 551 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 552 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 611 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 612 CATAAAGTCAAATGGGTT 629 >seq7578 Length=1327334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 838472 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 838414 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 838413 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 838354 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 838353 CATAAAGTCAAATGGGTT 838336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477960460764480