Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10346 262 3e-65 seq17275 102 7e-17 seq985 82.4 7e-11 >seq10346 Length=345594 Score = 262 bits (290), Expect = 3e-65 Identities = 575/854 (67%), Gaps = 28/854 (3%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || | ||||| || ||||| ||||| || |||| | |||||||| ||| Sbjct 268987 TGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 269041 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || || || | || | || || | | |||| | ||| || | Sbjct 269042 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACC---TTGCTCAAACCC-AGTTCCAGCAT 269097 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||||| || |||||||| ||||| || ||||||| | || ||||| || || Sbjct 269098 G--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 269155 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || ||||||| || || || | || | | |||||| ||| || | ||||| ||| Sbjct 269156 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 269215 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 ||||||| | | ||| | ||| | | || || || ||||||| || ||||| Sbjct 269216 TTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 269275 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||||||| || || |||||||| || || || || || |||||||| || || ||||| Sbjct 269276 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 269335 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || |||||||| || | ||| ||||| | ||||| |||| | |||| || ||||| Sbjct 269336 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTC 269392 Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 |||| ||||| ||| |||| | ||||||||| ||| | ||| | | ||||| | Sbjct 269393 CGCTGCAGCAAAGACTA-CAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGT 269451 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 |||||| | ||| || | || || || ||| |||| || || || | | | Sbjct 269452 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAA 269511 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 | | |||| || ||| || ||||| || || | || ||||||||||| |||| Sbjct 269512 ATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAT 269571 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | || || || || || |||||||| ||| | ||||| | || |||| | |||||||| Sbjct 269572 GTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTT 269631 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | | ||||| || | |||||||| || ||||| || ||||| || ||||| ||| Sbjct 269632 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 269691 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTT----TTCTGACAACTTTAACCAATCTGGA 13633 | || | || ||||| | | | || || ||| | | | ||| | | Sbjct 269692 CCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGA----TTCCCAGTGCCAA 269747 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATAC 13693 | || || || | || |||||||| ||||||| || ||||| | |||||||||||| Sbjct 269748 ATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 269807 Query 13694 ATCATCCATATATC 13707 ||| ||| ||||| Sbjct 269808 ATCTGCCAGATATC 269821 >seq17275 Length=3305369 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 1143215 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1143156 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 1143155 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1143096 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 1143095 CCACCACTCTTTCCCC 1143080 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 1154323 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1154264 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 1154263 ATAAAATCAAAAGGATTTT 1154245 >seq985 Length=6397689 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 2225014 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 2224956 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 2224955 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 2224917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430430709126864