Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq4455 116 3e-21 seq3648 102 7e-17 >seq4455 Length=3877446 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 785766 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 785825 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 785826 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAT 785885 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 785886 CTGAAGACCCTCAGGCTGAGGCTGCGGCGCTG 785917 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 788157 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 788216 Query 129164 GAC 129166 ||| Sbjct 788217 GAC 788219 >seq3648 Length=3343546 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 || |||| ||| || ||||| || | | || ||||| || || ||||| | || Sbjct 2094995 ATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGACTTCAAACTTTTCTTTG 2095054 Query 5375 CCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCG 5434 || ||||||||||| || || || ||||| |||| || ||||| | || || ||||| Sbjct 2095055 CCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTCACCTATGACACCAGCT 2095114 Query 5435 CCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAA 5494 || || || ||||||||||| | || | ||| || ||||| |||| | ||| || || Sbjct 2095115 CCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACAC 2095174 Query 5495 CCAGGTGGGAGCTTTATCAGAAGGTC 5520 |||| || ||| |||| ||| ||| Sbjct 2095175 CCAGAAGGCAGCGCTATCTGAATGTC 2095200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447162548499840