Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2874 105 5e-18 seq64438 82.4 5e-11 >seq2874 Length=3733233 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || | ||| Sbjct 1916404 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1916345 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||||| ||| || ||| | ||||||||||||| ||| |||||||| || Sbjct 1916344 CCCTTCTTCTCTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1916285 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 1916284 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1916237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||||||||| || ||||||||||||||| || || || || | |||||| Sbjct 1920556 GCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCCATG 1920497 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||| |||||||| ||||| || || ||||| || ||| || ||||| || Sbjct 1920496 T-CTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGGCA 1920438 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 1920437 GAGGGCATGGCATGGAGGCAGTGCCATCAG 1920408 >seq64438 Length=1527 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| ||| || || |||| |||||| | ||||| | | |||| |||| Sbjct 897 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 955 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | || | || ||||||| ||| || ||||| || || || | ||| | || | || | Sbjct 956 AAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTGATGTGCG 1015 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||| || ||||| || ||||||||||||||| || ||| | |||| | Sbjct 1016 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAA-GGTGC------ACCCAGG- 1067 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601 |||| ||||| |||| ||||| || || ||||| Sbjct 1068 -CCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTC 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339702197511336