Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq4455 147 2e-30 >seq4455 Length=3877446 Score = 147 bits (162), Expect = 2e-30 Identities = 116/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || | Sbjct 785764 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 785823 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| || ||||| || || ||||| || ||| ||||| |||||||| ||||| |||| Sbjct 785824 TGCCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGA 785883 Query 10260 ATCTAAAGACCCTAAGGCT 10278 |||| |||||||| ||||| Sbjct 785884 ATCTGAAGACCCTCAGGCT 785902 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 788144 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 788203 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||| || Sbjct 788204 TAGAAGCCTACATGACAATGAAGAT 788228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 10301 TTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGCCTTCAGCAAG 10360 ||||| || |||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct 786976 TTTCTTCCCTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTGAAGAATGCCTTTAGTAAG 787035 Query 10361 CTG 10363 || Sbjct 787036 GTG 787038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546660545848320