Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq782 134 1e-26 seq465 129 5e-25 seq10591 125 6e-24 seq21443 107 2e-18 seq23525 102 7e-17 seq1776 102 7e-17 seq69432 93.3 4e-14 seq1313 93.3 4e-14 seq10379 86.0 6e-12 seq621 84.2 2e-11 >seq782 Length=6300357 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || || || ||||| |||| |||||||||| ||| || || || || | ||| || Sbjct 3450658 TTAGACACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTA 3450599 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| || ||||||| || || ||||| || Sbjct 3450598 GTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTC 3450539 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||||| || ||||| ||||| | || ||||||||||| | | |||||| | | Sbjct 3450538 AGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGG 3450479 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 3450478 CTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3450425 >seq465 Length=2116526 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||||||||| ||||| || || || || || | ||| || || Sbjct 2111695 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 2111636 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| |||| || | | ||||| || || || Sbjct 2111635 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 2111576 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || ||||| | | |||||| | | ||||| Sbjct 2111575 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 2111516 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||| ||||||||||| || || || || |||||||||||||||||| || Sbjct 2111515 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 2111465 >seq10591 Length=527945 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||||||||| ||||| || || || || || | ||| || || Sbjct 132095 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 132154 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| |||| || | | ||||| || || || Sbjct 132155 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 132214 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || |||||| | | |||||| | | ||||| Sbjct 132215 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 132274 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 |||| ||||||||||| || || | || || ||||||||||||||| || || Sbjct 132275 TCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTTTGCA 132328 >seq21443 Length=656158 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| || || ||||| || | ||| || || Sbjct 30095 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 30154 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || ||| Sbjct 30155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 30214 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | ||||| ||||| || ||| |||||| | | || || Sbjct 30215 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 30274 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 30275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 30321 >seq23525 Length=221919 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | || || || || ||| Sbjct 219792 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 219851 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 219852 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 219911 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || || || | ||||| Sbjct 219912 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGAT 219971 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| |||||||| || |||||||| Sbjct 219972 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 220007 >seq1776 Length=1009680 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | || || || || ||| Sbjct 76297 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 76238 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 76237 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 76178 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || || || | ||||| Sbjct 76177 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 76118 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| |||||||| || |||||||| Sbjct 76117 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 76082 >seq69432 Length=13378 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | || || || || ||| Sbjct 12344 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 12403 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 12404 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 12463 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | | || | | | || || || | ||||| Sbjct 12464 ATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGAT 12523 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||||||||||| || |||||||| Sbjct 12524 GGTCTTCCCCATAAGAGTTTTCACGAA-ATCTGCAT 12558 >seq1313 Length=4574001 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||| |||||||||| ||| ||| || | ||||| || || || ||||| || || Sbjct 662714 ATCCCCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTT 662655 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || ||||| | | |||||| | | | ||| |||| ||||| Sbjct 662654 GTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGAT 662595 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || ||||||||||||||||| Sbjct 662594 GGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 662559 >seq10379 Length=4916278 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||| ||||| || || || || || | ||| || || | |||| | | Sbjct 1637652 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 1637593 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||| || || |||| || | | ||| || || || ||||| || ||| Sbjct 1637592 TCTTCCAGCTAATTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCCTTG 1637533 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 | | || ||| || ||| | | | |||||| | | ||||| |||| | |||| Sbjct 1637532 TGTTGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGGGATG 1637473 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 ||||| || || || || |||||||||||||||||| || || Sbjct 1637472 GTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTTTGCA 1637431 >seq621 Length=1137327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || | ||||| | ||| || || | |||| | ||||||| Sbjct 429901 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCC 429960 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || |||| || | | ||||| || || || ||||| || ||||| | | Sbjct 429961 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 430020 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || |||| | |||| | | | ||||| |||| |||||||| || Sbjct 430021 ATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTG 430080 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||||| |||||| Sbjct 430081 CCCGTGAGGGTCTTCACAAAGAGCTGCAT 430109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447702638483520