Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11133 159 5e-35 seq18021 158 2e-34 seq63335 132 8e-27 seq6496 107 3e-19 >seq11133 Length=892944 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 376561 CGCTAAGCGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 376503 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 376502 TCCGGCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 376443 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | ||||| | | || |||| |||||| || ||| || | Sbjct 376442 CTCGCGGAGTGCTGAAGGTTTTCCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 376383 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 376382 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 376323 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 376322 GACGCACTCTGTATGGCTTCGG 376301 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || |||||||| || ||||| ||||| || || Sbjct 469219 CGCTAAGCGTCACCGCAAGGTTTTGCGCGACAACATCCAGGGCATCACTAAGCCTGCCAT 469160 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || |||||||| || || ||||||||| | ||||| | ||||||| |||| Sbjct 469159 CCGACGCCTTGCTCGTCGCGGCGGTGTCAAGCGTATTTCTGGGCTTATCTATGAGGAGAC 469100 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| ||||| | ||||| ||| ||| || | |||||| || || || || Sbjct 469099 TCGCGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTCACTTACACGGA 469040 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || | |||||| | || ||||| |||| || || || Sbjct 469039 GCACGCCAAACGCAAGACCGTAACAGCAATGGATGTGGTTTATGCGCTGAAGCGACAGGG 468980 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 468979 ACGCACTCTTTACGGCTTCGG 468959 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| |||||||||||||| || || |||||||| || | Sbjct 392688 CGCCAAGCGTCACCGTAAAG-TCTTGCGAGATAACATCCAGGGTATTACCAAGCCTGCCA 392746 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| || || || ||||||||| | |||||| || | ||||| |||| Sbjct 392747 TTCGGCGTCTTGCTCGGCGCGGCGGTGTCAAGCGTATTTCTGGACTGATTTATGAGGAGA 392806 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| ||| |||| ||| ||| | || || | Sbjct 392807 CCCGCGGGGTTCTAAAGGTGTTCCTAGAGAACGTGATCCGTGACGCTGTTACTTACACGG 392866 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || |||||||| | ||||| || | ||||| || | Sbjct 392867 AGCACGCCAAGCGCAAGACCGTAACAGCCATGGATGTGGTCTACGCTCTCAAACGACAGG 392926 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | |||| || || || Sbjct 392927 GACGCACTCTTTACGGCTTCGG 392948 Score = 149 bits (164), Expect = 1e-31 Identities = 191/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 197949 GCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 198007 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||| | ||||||| || |||| || |||| Sbjct 198008 CCGGCGTCTGGCCCGGCGTGGCGGTGTCAAGAGGATCTCTGGTCTGATCTACGAGGAGAC 198067 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||| | ||| ||| |||| ||| ||| || |||||| || Sbjct 198068 TCGCGGGGTGCTCAAGGTGTTCTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 198127 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 198128 GCACGCCAAGCGCAAGACGGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 198187 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 198188 ACGCACCCTTTATGGCTTTGG 198208 Score = 149 bits (164), Expect = 1e-31 Identities = 207/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | | || || ||||| |||||||| || |||||||| ||||| Sbjct 203335 GCTAAGCGTCACCGGAAAGTACTGCGGGATAATATCCAAGGCATTACCAAGCCGGCTATT 203276 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||| | |||||||| || || || ||||||| ||| | || || |||| Sbjct 203275 CGGCGCCTTGCTAGACGTGGTGGGGTTAAACGAATCTCTGGTTTGATTTACGAGGAGACC 203216 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||| | || || ||| || |||| || || | |||||| ||| Sbjct 203215 CGAGGTGTTCTCAAGGTTTTTCTGGAGAATGTGATCCGGGACGCGGTGACCTATACGGAG 203156 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||||||||| |||||||| | || || || | || || ||||| Sbjct 203155 CACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTTAAGCGCCAAGGA 203096 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAACTTCGAATGG 16722 || | | || ||||| || |||||| || || | |||| ||||| Sbjct 203095 CGCACTCTATACGGTTTCGGCGGTTAATATTTTAGTTTTCCTTCCAATGG 203046 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || || || ||||| ||||| Sbjct 286415 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATTACAAAGCCTGCTATT 286474 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| |||||||| | || || | ||||||| || | | Sbjct 286475 CGCCGTTTGGCTCGGCGTGGTGGCGTCAAGCGCATTTCCGGCCTCATCTATGAGGAAACT 286534 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||| | ||| |||||| | || ||| || |||||| ||| Sbjct 286535 CGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCTGTCACCTATACGGAG 286594 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || || || | |||||||| || Sbjct 286595 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATACGCTCTAAAACGTCAGGGG 286654 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 286655 CGCACTCTGTATGGCTTCGG 286674 >seq18021 Length=561722 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| ||||||||||||||||| ||| Sbjct 422698 GCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGAATCACCAAGCCAGCCATC 422639 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || ||||| || ||||| |||| || | ||||||| |||| Sbjct 422638 CGGCGCCTTGCTCGCCGCGGTGGCGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 422579 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || | ||| || ||| Sbjct 422578 CGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 422519 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 422518 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTAGTCTATGCGCTGAAGCGCCAGGGC 422459 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 422458 CGCACCCTTTATGGCTTCGG 422439 >seq63335 Length=559 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 261 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 202 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| |||| || | |||| || |||| Sbjct 201 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 142 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || ||| ||| |||| || ||| | ||| || || Sbjct 141 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 82 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 81 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 22 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 21 TCGCACCCTCTACGGTTTCGG 1 >seq6496 Length=1565906 Score = 107 bits (118), Expect = 3e-19 Identities = 181/261 (69%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGA-ATCACCAAGCCAGCTAT 16491 |||||| | || |||| | ||| || || || || | ||| |||||||||||||| || Sbjct 1214636 GCTAAGAGCCACCGCAAAGTTCTGCGCGACAATATTCTAGGGCATCACCAAGCCAGCCAT 1214695 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| || | | || || |||| Sbjct 1214696 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 1214755 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 1214756 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 1214815 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 1214816 ACATGCCAAACGCAAGACAGTCACGACCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 1214875 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | ||||||||||| Sbjct 1214876 TCGTACCCTCTATGGTTTTGG 1214896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78979168507176