Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10346 273 2e-68 seq1811 145 8e-30 seq985 100 3e-16 >seq10346 Length=345594 Score = 273 bits (302), Expect = 2e-68 Identities = 535/785 (68%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 ||| || || ||||| || ||||| || ||| | | |||||||| || | | | Sbjct 269099 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTT 269158 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||||| | || || || | ||| || | || || ||| || | | | ||||| Sbjct 269159 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTC 269218 Query 93043 TATTACTCTACTATTTG-GTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 | ||||||| ||| | ||||||| ||||| | | ||| |||| | ||| ||||| | Sbjct 269219 TCTTACTCT-CTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 269277 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAAC 93160 | |||||||| || |||| || || || | ||||| ||||| | || || | | Sbjct 269278 CACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 269336 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 |||||||||||||||||||| ||||| || |||||| ||||||||| | | |||||| Sbjct 269337 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCC 269393 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 | || ||||| | |||| |||||| || | | || || | ||||| | Sbjct 269394 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 269453 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 || |||||||| || || ||||| | |||||| | ||||| || || || | || | Sbjct 269454 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAAT 269513 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 || | || | | |||| |||||| || || || | | | ||||||||||||||| Sbjct 269514 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 269573 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | ||||| || ||||||||||| || ||||||| | ||||| || ||||| |||||| Sbjct 269574 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 269633 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 || ||||| ||| || | |||||||| ||||| ||||| ||||||||| ||| || Sbjct 269634 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 269693 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | ||| |||||||| | |||| | || || ||||| | | | || Sbjct 269694 AGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATGTCC 269753 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || || || || || ||| | ||||| || || ||||| || || || ||||| | | Sbjct 269754 TTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGC 269813 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || || || || | | || || |||||||| || | ||| ||| | || | | Sbjct 269814 CAGATATCATGGTACTCGGTGGGGAAGATGACAAAGCGCCAGGAGTTTTCTCTCAGCAGC 269873 Query 93701 GGCTC 93705 ||||| Sbjct 269874 GGCTC 269878 >seq1811 Length=1713758 Score = 145 bits (160), Expect = 8e-30 Identities = 373/563 (66%), Gaps = 5/563 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 78118 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 78060 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||||||||||||||||| ||||| |||||| ||||||||| Sbjct 78059 GTCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGC 78000 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | | | |||||| ||||| || ||| |||||| || | || || | | Sbjct 77999 AGGTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCC 77940 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| | || ||||| | || || ||||| | || ||| | |||||| || || | Sbjct 77939 CAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCAT 77881 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | || | || | |||| ||| ||| || || | ||| || | Sbjct 77880 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTA 77823 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | |||||||| || || || ||| ||||||| || ||||| || | ||| || | Sbjct 77822 TGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 77763 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| | ||||||| |||| || || | ||||||| ||||| ||||| |||||| Sbjct 77762 TCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 77703 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 |||| ||||||| |||| |||||||| | | || ||| || || ||||| | Sbjct 77702 CAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGT 77643 Query 93570 CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 | | || || || || || ||||| | | | |||| || || | ||| |||| | Sbjct 77642 GCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCT 77583 Query 93630 TGTACATATCCCATATGTCTTGA 93652 | ||| | | ||| || || ||| Sbjct 77582 TATACGTTTTCCAAATATCATGA 77560 >seq985 Length=6397689 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 2227103 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 2227044 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 2227043 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 2226991 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 2225021 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2224962 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 2224961 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 2224902 Query 93475 TAC 93477 || Sbjct 2224901 CAC 2224899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556129697455680