Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq465 165 7e-36 seq10591 156 4e-33 seq621 134 1e-26 seq10379 122 7e-23 seq1313 111 1e-19 seq2511 104 2e-17 seq14322 100 2e-16 seq372 98.7 8e-16 seq18355 95.1 1e-14 seq14565 93.3 4e-14 seq12761 91.5 1e-13 seq4156 82.4 6e-11 >seq465 Length=2116526 Score = 165 bits (182), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || ||||| |||| ||||| || || | Sbjct 2111465 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCC 2111524 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || ||||| ||||||||||||||||||||||| ||||| || Sbjct 2111525 CAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 2111584 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| |||||| |||| || || Sbjct 2111585 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 2111644 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||| |||||| | || | || ||||| |||| || || Sbjct 2111645 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 2111695 >seq10591 Length=527945 Score = 156 bits (172), Expect = 4e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| ||||| || ||||| || || || || ||||| |||| ||||| || || Sbjct 132328 TGCAAACATGCAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGA 132269 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| || ||| | || | ||||| ||||||||||||||||||||||| ||||| Sbjct 132268 GCCCAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACC 132209 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| |||||||||||||||||| | || ||| |||||| |||| || Sbjct 132208 TGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGA 132149 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || ||||| |||||| | || | || ||||| |||| || || Sbjct 132148 CTACAACATCCACAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 132095 >seq621 Length=1137327 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || || |||| ||||| || || ||| Sbjct 430109 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 430050 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 | ||| || || ||||| ||||||||||||||||||||||| ||||| || || Sbjct 430049 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 429990 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| |||||||| ||||| ||| | |||||| || ||| |||| || |||||| Sbjct 429989 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCTCACTCTCTCAGACTACAAC 429930 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 || |||||| | |||||||| || | ||| ||| Sbjct 429929 ATCCAAAAACAGTCCACCATGCACCTGGTTCTGC 429896 >seq10379 Length=4916278 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| ||||| || ||||| || || | || || ||||| || | ||||| || || Sbjct 1637431 TGCAAACATGCAGATCTTTGTGAAGACCCTCACAGGCAAAACCATCCCCCTTGAGGTCGA 1637490 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| || ||| | || || |||| ||| ||||| ||||||||||||| ||||| Sbjct 1637491 GCCCAGTGACACCATTGAGAATGACAAAGCCAAAGTTCAACACAAGGAGGGTATCCCACC 1637550 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || | | ||| |||||||| ||||| || | || ||| |||||| |||| || Sbjct 1637551 TGACCAGTAGCATCTGATATTTGCTGGCAATTAGCTGGAAGATGGCCGCACTCTCTCAGA 1637610 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| || ||||| |||||| | || | || ||||| Sbjct 1637611 CTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCG 1637652 >seq1313 Length=4574001 Score = 111 bits (122), Expect = 1e-19 Identities = 146/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 662557 AGATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 662616 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 662617 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 662676 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC-CGCACCGTCTCCGATTAC 22395 | || | ||| ||| |||||||||||||| | | |||| | | || |||| || ||| Sbjct 662677 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGGGGATGGCAGGAACTCTCTCAGACTAC 662736 Query 22396 AACATTCAAAAAGAATCCACC 22416 |||| ||| | |||||| Sbjct 662737 GACATCTGGAAACAGTCCACC 662757 >seq2511 Length=2685710 Score = 104 bits (114), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | | || || |||| ||||| | || ||| Sbjct 488531 AGATGCAGATCTTTGTGAAGACCCTCATGGACAAGACCATCACCCTTGAGATCGAGCCCA 488472 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG-AGGGTATTCCACCCGAT 22335 || || | | || ||||| |||||||||||||||| ||||||| ||||| | Sbjct 488471 GTGACACTATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGGTATCCCACCTAAC 488412 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| ||| || | || |||||| | |||||| |||||| |||| | ||| Sbjct 488411 CAGCAGCGTCTGATACTTTCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTAC 488352 Query 22396 AACATTCAAAAAGAATCCACCATA 22419 ||||| || ||||| |||||| || Sbjct 488351 AACATCCAGAAAGAGTCCACCCTA 488328 >seq14322 Length=1968782 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||| | || ||||| || || || | ||| ||| |||| |||||| Sbjct 1227895 AAAATTCAAGACAAGGAGTGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 1227954 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || |||||||| || ||||| ||||| Sbjct 1227955 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 1228007 >seq372 Length=1164534 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || || || || | ||||| || || ||| Sbjct 809897 AGATGTGGATCTTTGTGAAGACCCTCACAGGCAAGACCATCGCCCTTGAGGTCGAGCCCA 809838 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || || || |||| ||||||||||||||| |||| || | ||| || | Sbjct 809837 GTGATGCCACTGAGAATGCCAAAGCCAAAATTCAAGACAAGTAGGGCATCCTACCTGACC 809778 Query 22337 AACAACGTCTTAT-ATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || |||| || ||||| ||||||||| | ||||| |||||| |||| || ||| Sbjct 809777 AGCAGTGTCTGATAATTTGAGGGCAAACAGCTGCAGGATGGCCGCACTCTCTCAGACTAC 809718 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 809717 AACATCCAGAAAGAGTCCACC 809697 >seq18355 Length=1729477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| | || ||||| || || | | || || || |||| ||||| ||||| ||| Sbjct 214094 AGATGGAGATCTTTGTGAACACCCTCATGGGCAAGACCATCACCCTTGAGGTGGAGGCCA 214035 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| || || ||||| |||| |||||||||||||| || | || || | Sbjct 214034 CTGACACCACTGAGAATGTCAAAGCCGAAATCCAAGACAAGGAGGGCATCCTGCCTGACC 213975 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| |||||||| ||||||||| |||||| | ||| ||| || || | Sbjct 213974 AGCAGTGTCTGATATTTGCGGGCAAACAGCCGGAGGATGGCTGCAGTCCCTCAGACTAGA 213915 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || |||| |||||| Sbjct 213914 ACATCCAGGAAGAGTCCACC 213895 >seq14565 Length=1636251 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 22206 TACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGA 22265 |||| || | ||||||| || ||||| || || | || |||| | |||| || || Sbjct 1463398 TACAAATGCAGAGATGCAGATCTTTGTGAAGACCCTCACAGGTAGGATCATCACCCTCGA 1463457 Query 22266 AGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 || || ||| || ||| || | |||| |||||||||||||||||||| || Sbjct 1463458 GGTCGAGCCCAGTGACACCACTGAGAACGTCAAGGCCAAAATTCAAGACAAGGAGGGCAT 1463517 Query 22326 TCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGT 22385 |||| || || || ||||| |||||||| ||||||||| ||| |||||| | Sbjct 1463518 CCCACTTGACCAGCAGCGTCTGATATTTGCGGGCAAACAGCCGGAG-----CCGCACTCT 1463572 Query 22386 CTCCGATTACAACATTCAAAAAGAATCCA 22414 || || | |||||| || ||||| |||| Sbjct 1463573 TTCAGACTGCAACATCCAGAAAGAGTCCA 1463601 >seq12761 Length=1273535 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| | | ||| Sbjct 705986 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGTTCCAGCCCAGT 705927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || |||| || || ||||| || || || ||||||||||| || | ||| || || Sbjct 705926 GACACCGGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCTACCTGACCAG 705867 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 705866 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 705807 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||| | |||||| Sbjct 705806 ATCCAGAAACAGTCCACC 705789 >seq4156 Length=7532868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| || || || ||||| |||||||||||||||||| | || ||| |||| Sbjct 5631835 GGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGC 5631776 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| || |||| Sbjct 5631775 ACTCTCTCAGACTACAACATCCAGAAAG 5631748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419190715631080