Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10346 156 8e-33 seq17275 84.2 4e-11 seq985 84.2 4e-11 >seq10346 Length=345594 Score = 156 bits (172), Expect = 8e-33 Identities = 389/581 (67%), Gaps = 11/581 (2%) Strand=Plus/Minus Query 42287 CGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGA 42346 |||| |||| || |||||| ||||| ||||||||| | ||| |||||||||||| Sbjct 269831 CGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGA 269772 Query 42347 GGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGTCTGAGAACGAAA-A 42403 |||| | |||||| ||||||||| ||| |||||| || ||| || || | | Sbjct 269771 GGAGGTGGACCTGTCCAAGGACATTTGGCA--CTGGGAATCCCTGAAGCCCAAGGAGAGA 269714 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | |||| | | | |||| ||||| || || ||| |||||||| ||||| || Sbjct 269713 GATTTTA-TATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAA 269655 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 | ||| | || | |||| || ||| || || ||||| |||| ||||| Sbjct 269654 CTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTT 269595 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 ||| || |||||||||||| | || ||||| |||| || | |||| ||||| Sbjct 269594 CCAAATTGCCATAGAGAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTTACAT 269535 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 |||||| || | | || |||| ||||| || |||||||| || |||| Sbjct 269534 AAAAGATCCCAAAGAAAGGGAATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAA 269475 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||||||||| || ||||| | ||||||| | | || || || | || || | Sbjct 269474 GAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACG 269415 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 | |||| |||| | || | || |||||||| |||| || || || || || || Sbjct 269414 TGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTT-TTCT--GGTTATTTTGCATCGATATT 269358 Query 42764 CTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| | ||| | |||||| || ||||| || || || ||||| || |||| Sbjct 269357 CTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA 269299 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | || ||||| | || | || ||||| ||||| ||||| Sbjct 269298 GAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 269258 >seq17275 Length=3305369 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 1143090 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 1143149 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 1143150 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 1143208 Query 42825 GACGA 42829 || || Sbjct 1143209 GATGA 1143213 >seq985 Length=6397689 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || || || |||||| Sbjct 2227000 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 2227059 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 2227060 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 2227118 Query 42827 CGAGG 42831 |||| Sbjct 2227119 TGAGG 2227123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943099377064320