Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq23525 138 3e-27 seq1776 138 3e-27 seq69432 129 1e-24 seq21443 123 6e-23 seq10591 111 4e-19 seq465 111 4e-19 seq18922 104 6e-17 seq16750 96.9 8e-15 seq13614 96.9 8e-15 seq9750 87.8 4e-12 seq621 86.0 1e-11 seq6252 84.2 5e-11 >seq23525 Length=221919 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 219781 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 219840 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 219841 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 219900 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 219901 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 219960 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 219961 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTTG 220011 >seq1776 Length=1009680 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 76308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 76249 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 76248 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 76189 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 76188 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 76129 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 76128 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 76078 >seq69432 Length=13378 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 12333 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 12392 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 12393 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 12452 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| ||| | ||| || Sbjct 12453 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACC 12512 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| | ||||| || ||||| ||||||||| || Sbjct 12513 TCGAGGGTGATGGTCTTCCCCATAAGAGTTTTCACGAA-ATCTGCATTTTG 12562 >seq21443 Length=656158 Score = 123 bits (136), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 30131 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 30190 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || ||||| |||||||||||||| || ||||| Sbjct 30191 ATGAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACA 30247 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 30248 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 30307 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 30308 ACGAAGATCTGCATTTTG 30325 >seq10591 Length=527945 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||||| || ||||| | ||||| || || || Sbjct 132131 TCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAT 132190 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || || ||||| ||||| ||||| Sbjct 132191 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTC 132250 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| || || || || | ||||| || Sbjct 132251 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACA 132310 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 132311 AAGATCTGCAT 132321 >seq465 Length=2116526 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||||| || ||||| | ||||| || || || Sbjct 2111659 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAT 2111600 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || || ||||| ||||| || || Sbjct 2111599 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTC 2111540 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| || || || || || ||||| || Sbjct 2111539 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACA 2111480 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2111479 AAGATCTGCAT 2111469 >seq18922 Length=4408181 Score = 104 bits (114), Expect = 6e-17 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 376813 CCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 376872 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | | ||| ||||| | ||| || || || |||||||| | ||| | | | || Sbjct 376873 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGA 376930 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||| ||||||||||| || || || || |||||||| | ||| | | ||| || Sbjct 376931 ATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCATGGGTTCGACC 376990 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| |||| |||||||| || || | || | ||| |||||| || || Sbjct 376991 TCGAGGGTGACAGTCTTCCCCGTAAG-GATTTTATGAAAATCTGCGTTTTG 377040 Score = 104 bits (114), Expect = 6e-17 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 379817 CCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 379876 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | | ||| ||||| | ||| || || || |||||||| | ||| | | | || Sbjct 379877 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGA 379934 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||| ||||||||||| || || || || |||||||| | ||| | | ||| || Sbjct 379935 ATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCATGGGTTCGACC 379994 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| |||| |||||||| || || | || | ||| |||||| || || Sbjct 379995 TCGAGGGTGACAGTCTTCCCCGTAAG-GATTTTATGAAAATCTGCGTTTTG 380044 >seq16750 Length=4688092 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTA 288378 ||||| ||||| || || || |||||||| | || ||| | || |||||||| ||| Sbjct 387533 TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 387474 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || || |||||| | | || | ||| || || || ||||| Sbjct 387473 TCCTGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATG 387414 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| || || || || ||||| ||||||||| Sbjct 387413 GTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 387378 >seq13614 Length=2327589 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | | ||||||| || || ||||| ||||| ||||| | Sbjct 1470662 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 1470603 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | | ||| ||||| | ||| || || || |||||| | || | || | || Sbjct 1470602 AAAATCCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTAAGCAGGAGGA 1470543 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 1470542 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 1470483 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| |||||||| | || || || | ||| |||||| || || Sbjct 1470482 TCAAGAGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCGTTTTG 1470432 >seq9750 Length=790633 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | | ||||||| || || ||||| || || |||| | Sbjct 138607 CCACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGAC 138548 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| | || || |||||||| | || ||| | || Sbjct 138547 AAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 138488 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||| ||| | ||| || Sbjct 138487 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCTTATCTGAGGGTTCAACC 138428 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| |||||||| | || || || || || ||||||||| || Sbjct 138427 TCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTTG 138377 >seq621 Length=1137327 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || || || ||| | ||||||||| || ||||| | ||| ||| | || || Sbjct 429898 AGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCC 429957 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || || ||||||||||| || | |||||| || || || || Sbjct 429958 TCCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCT 430017 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || ||||| ||||| | || || | | | || | || || || || ||||| ||| Sbjct 430018 TGAATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTC 430077 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || | |||||| Sbjct 430078 TTGCCCGTGAGGGTCTTCACAAAGAGCTGCAT 430109 >seq6252 Length=4458365 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| | |||||| | || ||||| || |||| | || || |||| ||| Sbjct 652975 TCTTTCTGGATGTCATAGTCAGAAAGAGTGCGGCCATCTTTCACCTGCTTGACTGCAAAG 652916 Query 288343 ATCAGACGCTGTTGAGAATCTGGGA---TTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 | || ||| || || |||| | ||||| ||||||||||| || || ||||| Sbjct 652915 TTAAGCGTCTGCTGC---TCGGGGAGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 652859 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || | || ||||| | ||| || |||| Sbjct 652858 TTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGCAATGGTCTTGCAGGTAAGGCTCTTC 652799 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 652798 ACGAAGATCTGCATTTTG 652781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178066912531696