Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10591 102 8e-17 seq465 102 8e-17 seq8820 82.4 8e-11 >seq10591 Length=527945 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| ||||| || | || | | | ||||| || || ||||||||||| Sbjct 132094 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 132153 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || ||||| |||| | | || |||||||| ||||| || || Sbjct 132154 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 132213 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| | Sbjct 132214 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 132272 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| || || | || |||||||| ||||||||| Sbjct 132273 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATG 132322 >seq465 Length=2116526 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| ||||| || | || | | | ||||| || || ||||||||||| Sbjct 2111696 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 2111637 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || ||||| |||| | | || |||||||| ||||| || || Sbjct 2111636 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 2111577 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| | Sbjct 2111576 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 2111518 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 2111517 CCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 2111468 >seq8820 Length=2893063 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| || || | ||| |||||||||||||| ||| |||| || ||||| | Sbjct 2560719 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 2560660 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || ||||| || | |||||| ||||||| ||||| Sbjct 2560659 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGG 2560620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495610857095040