Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq465 120 2e-22 seq10591 116 3e-21 seq23525 100 2e-16 seq16750 95.1 9e-15 seq1776 95.1 9e-15 seq69432 82.4 5e-11 >seq465 Length=2116526 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || || | || ||||| || ||||| || |||||||| || Sbjct 2111697 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 2111638 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| | |||||||| || |||||| |||||| ||||| || Sbjct 2111637 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 2111578 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| ||| | || || || || || || | Sbjct 2111577 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 2111518 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | ||| |||||||| || || || || || ||||| || ||||| |||| Sbjct 2111517 CCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTG 2111464 >seq10591 Length=527945 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || || | || ||||| || ||||| || |||||||| || Sbjct 132093 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTG 132152 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| | |||||||| || |||||| |||||| ||||| || Sbjct 132153 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 132212 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| || | || || || || || || | Sbjct 132213 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 132272 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | ||| |||||||| || || | || |||||||| || ||||| |||| Sbjct 132273 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTTTG 132326 >seq23525 Length=221919 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 219781 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 219840 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 219841 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 219900 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 219901 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 219960 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 219961 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 220010 >seq16750 Length=4688092 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 387594 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC---- 387539 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| ||||| |||||||| | |||| | || || || ||| Sbjct 387538 AGA-------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 387486 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | |||| ||| || Sbjct 387485 ATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAACC 387426 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 387425 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 387379 >seq1776 Length=1009680 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 76308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 76249 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 76248 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 76189 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 76188 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 76129 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 76128 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 76079 >seq69432 Length=13378 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 12333 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 12392 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 12393 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 12452 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| |||| ||| || Sbjct 12453 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACC 12512 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || | |||||||| || |||| ||||| || Sbjct 12513 TCGAGGGTGATGGTCTTCCCCATAAGAGTTTTCAC-GAAATCTGCATTTT 12561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356934510542120